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Items: 1 to 20 of 54

1.

tropiTree: an NGS-based EST-SSR resource for 24 tropical tree species.

Russell JR, Hedley PE, Cardle L, Dancey S, Morris J, Booth A, Odee D, Mwaura L, Omondi W, Angaine P, Machua J, Muchugi A, Milne I, Kindt R, Jamnadass R, Dawson IK.

PLoS One. 2014 Jul 15;9(7):e102502. doi: 10.1371/journal.pone.0102502. eCollection 2014.

2.

SSR mining in coffee tree EST databases: potential use of EST-SSRs as markers for the Coffea genus.

Poncet V, Rondeau M, Tranchant C, Cayrel A, Hamon S, de Kochko A, Hamon P.

Mol Genet Genomics. 2006 Nov;276(5):436-49. Epub 2006 Aug 19.

PMID:
16924545
3.

Using next-generation sequencing approaches to isolate simple sequence repeat (SSR) loci in the plant sciences.

Zalapa JE, Cuevas H, Zhu H, Steffan S, Senalik D, Zeldin E, McCown B, Harbut R, Simon P.

Am J Bot. 2012 Feb;99(2):193-208. doi: 10.3732/ajb.1100394. Epub 2011 Dec 20. Review.

4.

De novo sequencing analysis of the Rosa roxburghii fruit transcriptome reveals putative ascorbate biosynthetic genes and EST-SSR markers.

Yan X, Zhang X, Lu M, He Y, An H.

Gene. 2015 Apr 25;561(1):54-62. doi: 10.1016/j.gene.2015.02.054. Epub 2015 Feb 19.

PMID:
25701597
5.

Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.).

Thiel T, Michalek W, Varshney RK, Graner A.

Theor Appl Genet. 2003 Feb;106(3):411-22. Epub 2002 Sep 14.

PMID:
12589540
6.

Large scale in-silico identification and characterization of simple sequence repeats (SSRs) from de novo assembled transcriptome of Catharanthus roseus (L.) G. Don.

Kumar S, Shah N, Garg V, Bhatia S.

Plant Cell Rep. 2014 Jun;33(6):905-18. doi: 10.1007/s00299-014-1569-8. Epub 2014 Feb 1.

PMID:
24482265
7.

Development and characterization of 1,827 expressed sequence tag-derived simple sequence repeat markers for ramie (Boehmeria nivea L. Gaud).

Liu T, Zhu S, Fu L, Tang Q, Yu Y, Chen P, Luan M, Wang C, Tang S.

PLoS One. 2013;8(4):e60346. doi: 10.1371/journal.pone.0060346. Epub 2013 Apr 2.

8.

Development and characterization of new microsatellites for walnut (Juglans regia).

Zhang ZY, Han JW, Jin Q, Wang Y, Pang XM, Li YY.

Genet Mol Res. 2013 Oct 18;12(4):4723-34. doi: 10.4238/2013.October.18.10.

9.

Transcriptome de novo assembly sequencing and analysis of the toxic dinoflagellate Alexandrium catenella using the Illumina platform.

Zhang S, Sui Z, Chang L, Kang K, Ma J, Kong F, Zhou W, Wang J, Guo L, Geng H, Zhong J, Ma Q.

Gene. 2014 Mar 10;537(2):285-93. doi: 10.1016/j.gene.2013.12.041. Epub 2014 Jan 15.

PMID:
24440238
10.

Development, cross-species/genera transferability of novel EST-SSR markers and their utility in revealing population structure and genetic diversity in sugarcane.

Singh RK, Jena SN, Khan S, Yadav S, Banarjee N, Raghuvanshi S, Bhardwaj V, Dattamajumder SK, Kapur R, Solomon S, Swapna M, Srivastava S, Tyagi AK.

Gene. 2013 Jul 25;524(2):309-29. doi: 10.1016/j.gene.2013.03.125. Epub 2013 Apr 13.

PMID:
23587912
11.

In silico mining for simple sequence repeat loci in a pineapple expressed sequence tag database and cross-species amplification of EST-SSR markers across Bromeliaceae.

Wöhrmann T, Weising K.

Theor Appl Genet. 2011 Aug;123(4):635-47. doi: 10.1007/s00122-011-1613-9. Epub 2011 May 28.

PMID:
21625993
12.

Next-generation sequencing of the Chrysanthemum nankingense (Asteraceae) transcriptome permits large-scale unigene assembly and SSR marker discovery.

Wang H, Jiang J, Chen S, Qi X, Peng H, Li P, Song A, Guan Z, Fang W, Liao Y, Chen F.

PLoS One. 2013 Apr 23;8(4):e62293. doi: 10.1371/journal.pone.0062293. Print 2013.

13.

Characterization of EST-SSR markers in durum wheat EST library and functional analysis of SSR-containing EST fragments.

Asadi AA, Rashidi Monfared S.

Mol Genet Genomics. 2014 Aug;289(4):625-40. doi: 10.1007/s00438-014-0839-z. Epub 2014 Mar 21.

PMID:
24652471
14.

Rapid development of microsatellite markers for Pandanus boninensis (Pandanaceae) by pyrosequencing technology.

Setsuko S, Uchiyama K, Sugai K, Yoshimaru H.

Am J Bot. 2012 Jan;99(1):e33-7. doi: 10.3732/ajb.1100300. Epub 2011 Dec 30.

15.

Exploiting rice-sorghum synteny for targeted development of EST-SSRs to enrich the sorghum genetic linkage map.

Ramu P, Kassahun B, Senthilvel S, Ashok Kumar C, Jayashree B, Folkertsma RT, Reddy LA, Kuruvinashetti MS, Haussmann BI, Hash CT.

Theor Appl Genet. 2009 Nov;119(7):1193-204. doi: 10.1007/s00122-009-1120-4. Epub 2009 Aug 8.

PMID:
19669123
16.

Isolation and characterization of EST-SSR markers in Schima mertensiana (Theaceae) using pyrosequencing technology.

Setsuko S, Uchiyama K, Sugai K, Yoshimaru H.

Am J Bot. 2012 Jan;99(1):e38-42. doi: 10.3732/ajb.1100301. Epub 2011 Dec 30.

17.

Development and characterization of EST-SSR markers in Paeonia suffruticosa (Paeoniaceae).

Hou XG, Guo DL, Wang J.

Am J Bot. 2011 Nov;98(11):e303-5. doi: 10.3732/ajb.1100172. Epub 2011 Oct 14.

18.

Cross-species transferability of G. arboreum-derived EST-SSRs in the diploid species of Gossypium.

Guo W, Wang W, Zhou B, Zhang T.

Theor Appl Genet. 2006 May;112(8):1573-81. Epub 2006 Apr 5.

PMID:
16596396
19.

Mapping and characterization of new EST-derived microsatellites for potato (Solanum tuberosum L.).

Feingold S, Lloyd J, Norero N, Bonierbale M, Lorenzen J.

Theor Appl Genet. 2005 Aug;111(3):456-66. Epub 2005 Jun 8.

PMID:
15942755
20.

Microsatellite markers derived from Calophyllum inophyllum (Clusiaceae) expressed sequence tags.

Setsuko S, Uchiyama K, Sugai K, Hanaoka S, Yoshimaru H.

Am J Bot. 2012 Jan;99(1):e28-32. doi: 10.3732/ajb.1100299. Epub 2011 Dec 27.

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