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Items: 1 to 20 of 116

1.

Exploration of the binding modes of buffalo PGRP1 receptor complexed with meso-diaminopimelic acid and lysine-type peptidoglycans by molecular dynamics simulation and free energy calculation.

Sahoo BR, Dubey PK, Goyal S, Bhoi GK, Lenka SK, Maharana J, Pradhan SK, Kataria RS.

Chem Biol Interact. 2014 Sep 5;220:255-68. doi: 10.1016/j.cbi.2014.06.028. Epub 2014 Jul 8.

PMID:
25014416
2.

Crystal structure of Drosophila PGRP-SD suggests binding to DAP-type but not lysine-type peptidoglycan.

Leone P, Bischoff V, Kellenberger C, Hetru C, Royet J, Roussel A.

Mol Immunol. 2008 May;45(9):2521-30. doi: 10.1016/j.molimm.2008.01.015. Epub 2008 Mar 4.

PMID:
18304640
3.

Structural basis for preferential recognition of diaminopimelic acid-type peptidoglycan by a subset of peptidoglycan recognition proteins.

Lim JH, Kim MS, Kim HE, Yano T, Oshima Y, Aggarwal K, Goldman WE, Silverman N, Kurata S, Oh BH.

J Biol Chem. 2006 Mar 24;281(12):8286-95. Epub 2006 Jan 20.

4.

Structural basis for peptidoglycan binding by peptidoglycan recognition proteins.

Guan R, Roychowdhury A, Ember B, Kumar S, Boons GJ, Mariuzza RA.

Proc Natl Acad Sci U S A. 2004 Dec 7;101(49):17168-73. Epub 2004 Nov 30.

5.

Involvement of Manduca sexta peptidoglycan recognition protein-1 in the recognition of bacteria and activation of prophenoloxidase system.

Sumathipala N, Jiang H.

Insect Biochem Mol Biol. 2010 Jun;40(6):487-95. doi: 10.1016/j.ibmb.2010.04.008. Epub 2010 Apr 21.

6.

Selective recognition of synthetic lysine and meso-diaminopimelic acid-type peptidoglycan fragments by human peptidoglycan recognition proteins I{alpha} and S.

Kumar S, Roychowdhury A, Ember B, Wang Q, Guan R, Mariuzza RA, Boons GJ.

J Biol Chem. 2005 Nov 4;280(44):37005-12. Epub 2005 Aug 29.

7.

Crystal structure of human peptidoglycan recognition protein S (PGRP-S) at 1.70 A resolution.

Guan R, Wang Q, Sundberg EJ, Mariuzza RA.

J Mol Biol. 2005 Apr 8;347(4):683-91.

PMID:
15769462
8.

Diversity of innate immune recognition mechanism for bacterial polymeric meso-diaminopimelic acid-type peptidoglycan in insects.

Yu Y, Park JW, Kwon HM, Hwang HO, Jang IH, Masuda A, Kurokawa K, Nakayama H, Lee WJ, Dohmae N, Zhang J, Lee BL.

J Biol Chem. 2010 Oct 22;285(43):32937-45. doi: 10.1074/jbc.M110.144014. Epub 2010 Aug 11.

9.

Crystal structure of human peptidoglycan recognition protein I alpha bound to a muramyl pentapeptide from Gram-positive bacteria.

Guan R, Brown PH, Swaminathan CP, Roychowdhury A, Boons GJ, Mariuzza RA.

Protein Sci. 2006 May;15(5):1199-206.

10.

Structural insights into the bactericidal mechanism of human peptidoglycan recognition proteins.

Cho S, Wang Q, Swaminathan CP, Hesek D, Lee M, Boons GJ, Mobashery S, Mariuzza RA.

Proc Natl Acad Sci U S A. 2007 May 22;104(21):8761-6. Epub 2007 May 14.

11.

Crystal structure of a peptidoglycan recognition protein (PGRP) in complex with a muramyl tripeptide from Gram-positive bacteria.

Guan R, Roychowdury A, Ember B, Kumar S, Boons GJ, Mariuzza RA.

J Endotoxin Res. 2005;11(1):41-6.

PMID:
15826377
12.

Synthesis of diaminopimelic acid containing peptidoglycan fragments and tracheal cytotoxin (TCT) and investigation of their biological functions.

Kawasaki A, Karasudani Y, Otsuka Y, Hasegawa M, Inohara N, Fujimoto Y, Fukase K.

Chemistry. 2008;14(33):10318-30. doi: 10.1002/chem.200801121.

13.

Meso-diaminopimelic acid and meso-lanthionine, amino acids specific to bacterial peptidoglycans, activate human epithelial cells through NOD1.

Uehara A, Fujimoto Y, Kawasaki A, Kusumoto S, Fukase K, Takada H.

J Immunol. 2006 Aug 1;177(3):1796-804.

14.

Catalytic mechanism of l,l-diaminopimelic acid with diaminopimelate epimerase by molecular docking simulations.

Brunetti L, Galeazzi R, Orena M, Bottoni A.

J Mol Graph Model. 2008 Apr;26(7):1082-90. Epub 2007 Oct 5.

PMID:
18023379
15.

Drosophila immunity: analysis of PGRP-SB1 expression, enzymatic activity and function.

Zaidman-Rémy A, Poidevin M, Hervé M, Welchman DP, Paredes JC, Fahlander C, Steiner H, Mengin-Lecreulx D, Lemaitre B.

PLoS One. 2011 Feb 18;6(2):e17231. doi: 10.1371/journal.pone.0017231.

16.

Structural and functional investigation of zebrafish (Danio rerio) NOD1 leucine rich repeat domain and its interaction with iE-DAP.

Maharana J, Sahoo BR, Bej A, Patra MC, Dehury B, Bhoi GK, Lenka SK, Sahoo JR, Rout AK, Behera BK.

Mol Biosyst. 2014 Nov;10(11):2942-53. doi: 10.1039/c4mb00212a.

PMID:
25137227
17.

Activation of nucleotide-binding oligomerization domain 1 (NOD1) receptor signaling in Labeo rohita by iE-DAP and identification of ligand-binding key motifs in NOD1 by molecular modeling and docking.

Sahoo BR, Swain B, Dikhit MR, Basu M, Bej A, Jayasankar P, Samanta M.

Appl Biochem Biotechnol. 2013 Jul;170(6):1282-309. doi: 10.1007/s12010-013-0263-6. Epub 2013 May 9.

PMID:
23657901
18.

Peptidoglycan recognition protein (PGRP) from eri-silkworm, Samia cynthia ricini; protein purification and induction of the gene expression.

Onoe H, Matsumoto A, Hashimoto K, Yamano Y, Morishima I.

Comp Biochem Physiol B Biochem Mol Biol. 2007 Jul;147(3):512-9. Epub 2007 Mar 16.

PMID:
17434328
19.

A Drosophila pattern recognition receptor contains a peptidoglycan docking groove and unusual L,D-carboxypeptidase activity.

Chang CI, Pili-Floury S, Hervé M, Parquet C, Chelliah Y, Lemaitre B, Mengin-Lecreulx D, Deisenhofer J.

PLoS Biol. 2004 Sep;2(9):E277. Epub 2004 Sep 7.

20.

Bacterial peptidoglycan with amidated meso-diaminopimelic acid evades NOD1 recognition: an insight into NOD1 structure-recognition.

Vijayrajratnam S, Pushkaran AC, Balakrishnan A, Vasudevan AK, Biswas R, Mohan CG.

Biochem J. 2016 Dec 15;473(24):4573-4592. Epub 2016 Oct 14.

PMID:
27742759

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