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Items: 1 to 20 of 73

1.

Parsing ecological signal from noise in next generation amplicon sequencing.

Nguyen NH, Smith D, Peay K, Kennedy P.

New Phytol. 2015 Mar;205(4):1389-93. doi: 10.1111/nph.12923. Epub 2014 Jul 2. No abstract available.

2.

Clinical application of amplicon-based next-generation sequencing in cancer.

Chang F, Li MM.

Cancer Genet. 2013 Dec;206(12):413-9. doi: 10.1016/j.cancergen.2013.10.003. Epub 2013 Oct 11. Review.

PMID:
24332266
3.

Occult Specimen Contamination in Routine Clinical Next-Generation Sequencing Testing.

Sehn JK, Spencer DH, Pfeifer JD, Bredemeyer AJ, Cottrell CE, Abel HJ, Duncavage EJ.

Am J Clin Pathol. 2015 Oct;144(4):667-74. doi: 10.1309/AJCPR88WDJJLDMBN.

PMID:
26386089
4.

Next generation restoration genetics: applications and opportunities.

Williams AV, Nevill PG, Krauss SL.

Trends Plant Sci. 2014 Aug;19(8):529-37. doi: 10.1016/j.tplants.2014.03.011. Epub 2014 Apr 24. Review.

PMID:
24767982
5.

Next-generation sequencing technologies for environmental DNA research.

Shokralla S, Spall JL, Gibson JF, Hajibabaei M.

Mol Ecol. 2012 Apr;21(8):1794-805. doi: 10.1111/j.1365-294X.2012.05538.x. Review.

PMID:
22486820
6.

SESAME (SEquence Sorter & AMplicon Explorer): genotyping based on high-throughput multiplex amplicon sequencing.

Meglécz E, Piry S, Desmarais E, Galan M, Gilles A, Guivier E, Pech N, Martin JF.

Bioinformatics. 2011 Jan 15;27(2):277-8. doi: 10.1093/bioinformatics/btq641. Epub 2010 Nov 16.

7.

Of contigs and quagmires: next-generation sequencing pitfalls associated with transcriptomic studies.

DeWoody JA, Abts KC, Fahey AL, Ji Y, Kimble SJ, Marra NJ, Wijayawardena BK, Willoughby JR.

Mol Ecol Resour. 2013 Jul;13(4):551-8. doi: 10.1111/1755-0998.12107. Epub 2013 Apr 25. Review.

PMID:
23615313
8.

Next-generation sequencing of transcriptomes: a guide to RNA isolation in nonmodel animals.

Gayral P, Weinert L, Chiari Y, Tsagkogeorga G, Ballenghien M, Galtier N.

Mol Ecol Resour. 2011 Jul;11(4):650-61. doi: 10.1111/j.1755-0998.2011.03010.x. Epub 2011 Apr 12.

PMID:
21481219
9.

Fungal high-throughput taxonomic identification tool for use with next-generation sequencing (FHiTINGS).

Dannemiller KC, Reeves D, Bibby K, Yamamoto N, Peccia J.

J Basic Microbiol. 2014 Apr;54(4):315-21. doi: 10.1002/jobm.201200507. Epub 2013 Jun 14.

PMID:
23765392
10.

ICO amplicon NGS data analysis: a Web tool for variant detection in common high-risk hereditary cancer genes analyzed by amplicon GS Junior next-generation sequencing.

Lopez-Doriga A, Feliubadaló L, Menéndez M, Lopez-Doriga S, Morón-Duran FD, del Valle J, Tornero E, Montes E, Cuesta R, Campos O, Gómez C, Pineda M, González S, Moreno V, Capellá G, Lázaro C.

Hum Mutat. 2014 Mar;35(3):271-7.

PMID:
24227591
11.

Ten years of next-generation sequencing technology.

van Dijk EL, Auger H, Jaszczyszyn Y, Thermes C.

Trends Genet. 2014 Sep;30(9):418-26. doi: 10.1016/j.tig.2014.07.001. Epub 2014 Aug 6. Review.

PMID:
25108476
12.

Reconstructing viral quasispecies from NGS amplicon reads.

Mancuso N, Tork B, Skums P, Ganova-Raeva L, Măndoiu I, Zelikovsky A.

In Silico Biol. 2011-2012;11(5-6):237-49. doi: 10.3233/ISB-2012-0458.

PMID:
23202425
13.

What is next generation sequencing?

Behjati S, Tarpey PS.

Arch Dis Child Educ Pract Ed. 2013 Dec;98(6):236-8. doi: 10.1136/archdischild-2013-304340. Epub 2013 Aug 28. Review.

14.

Identification and characterization of Highlands J virus from a Mississippi sandhill crane using unbiased next-generation sequencing.

Ip HS, Wiley MR, Long R, Palacios G, Shearn-Bochsler V, Whitehouse CA.

J Virol Methods. 2014 Sep;206:42-5. doi: 10.1016/j.jviromet.2014.05.018. Epub 2014 May 29.

15.

Massively parallel sequencing technology in pathogenic microbes.

Tripathy S, Jiang RH.

Methods Mol Biol. 2012;835:271-94. doi: 10.1007/978-1-61779-501-5_17.

PMID:
22183660
16.

Contribution of high-throughput DNA sequencing to the study of primary immunodeficiencies.

Picard C, Fischer A.

Eur J Immunol. 2014 Oct;44(10):2854-61. doi: 10.1002/eji.201444669. Epub 2014 Sep 12. Review.

17.

Setting up next-generation sequencing in the medical laboratory.

Yu B.

Methods Mol Biol. 2014;1168:195-206. doi: 10.1007/978-1-4939-0847-9_11. Review.

PMID:
24870137
18.

Next-generation sequencing approaches to understanding the oral microbiome.

Zaura E.

Adv Dent Res. 2012 Sep;24(2):81-5. doi: 10.1177/0022034512449466. Review.

PMID:
22899686
19.

Next-generation sequencing and potential applications in fungal genomics.

Sanmiguel P.

Methods Mol Biol. 2011;722:51-60. doi: 10.1007/978-1-61779-040-9_4.

PMID:
21590412
20.

Cost-efficient HIV-1 drug resistance surveillance using multiplexed high-throughput amplicon sequencing: implications for use in low- and middle-income countries.

Ekici H, Rao SD, Sönnerborg A, Ramprasad VL, Gupta R, Neogi U.

J Antimicrob Chemother. 2014 Dec;69(12):3349-55. doi: 10.1093/jac/dku278. Epub 2014 Jul 31.

PMID:
25085657

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