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Items: 1 to 20 of 101

1.

Functional annotation and structural characterization of a novel lactonase hydrolyzing D-xylono-1,4-lactone-5-phosphate and L-arabino-1,4-lactone-5-phosphate.

Korczynska M, Xiang DF, Zhang Z, Xu C, Narindoshvili T, Kamat SS, Williams HJ, Chang SS, Kolb P, Hillerich B, Sauder JM, Burley SK, Almo SC, Swaminathan S, Shoichet BK, Raushel FM.

Biochemistry. 2014 Jul 22;53(28):4727-38. doi: 10.1021/bi500595c. Epub 2014 Jul 9.

2.

Structure-based function discovery of an enzyme for the hydrolysis of phosphorylated sugar lactones.

Xiang DF, Kolb P, Fedorov AA, Xu C, Fedorov EV, Narindoshivili T, Williams HJ, Shoichet BK, Almo SC, Raushel FM.

Biochemistry. 2012 Feb 28;51(8):1762-73. doi: 10.1021/bi201838b. Epub 2012 Feb 15.

3.

Functional annotation and three-dimensional structure of Dr0930 from Deinococcus radiodurans, a close relative of phosphotriesterase in the amidohydrolase superfamily.

Xiang DF, Kolb P, Fedorov AA, Meier MM, Fedorov LV, Nguyen TT, Sterner R, Almo SC, Shoichet BK, Raushel FM.

Biochemistry. 2009 Mar 17;48(10):2237-47. doi: 10.1021/bi802274f.

4.

Discovery of an L-fucono-1,5-lactonase from cog3618 of the amidohydrolase superfamily.

Hobbs ME, Vetting M, Williams HJ, Narindoshvili T, Kebodeaux DM, Hillerich B, Seidel RD, Almo SC, Raushel FM.

Biochemistry. 2013 Jan 8;52(1):239-53. doi: 10.1021/bi3015554. Epub 2012 Dec 20.

5.

Directed evolution of a thermostable quorum-quenching lactonase from the amidohydrolase superfamily.

Chow JY, Xue B, Lee KH, Tung A, Wu L, Robinson RC, Yew WS.

J Biol Chem. 2010 Dec 24;285(52):40911-20. doi: 10.1074/jbc.M110.177139. Epub 2010 Oct 27.

6.

Galactaro δ-lactone isomerase: lactone isomerization by a member of the amidohydrolase superfamily.

Bouvier JT, Groninger-Poe FP, Vetting M, Almo SC, Gerlt JA.

Biochemistry. 2014 Feb 4;53(4):614-6. doi: 10.1021/bi5000492. Epub 2014 Jan 24.

7.

Structural evidence of a productive active site architecture for an evolved quorum-quenching GKL lactonase.

Xue B, Chow JY, Baldansuren A, Yap LL, Gan YH, Dikanov SA, Robinson RC, Yew WS.

Biochemistry. 2013 Apr 2;52(13):2359-70. doi: 10.1021/bi4000904. Epub 2013 Mar 19.

8.

Functional identification of incorrectly annotated prolidases from the amidohydrolase superfamily of enzymes.

Xiang DF, Patskovsky Y, Xu C, Meyer AJ, Sauder JM, Burley SK, Almo SC, Raushel FM.

Biochemistry. 2009 May 5;48(17):3730-42. doi: 10.1021/bi900111q.

9.

Structural and catalytic diversity within the amidohydrolase superfamily.

Seibert CM, Raushel FM.

Biochemistry. 2005 May 3;44(17):6383-91. Review.

PMID:
15850372
10.
11.

Functional annotation and three-dimensional structure of an incorrectly annotated dihydroorotase from cog3964 in the amidohydrolase superfamily.

Ornelas A, Korczynska M, Ragumani S, Kumaran D, Narindoshvili T, Shoichet BK, Swaminathan S, Raushel FM.

Biochemistry. 2013 Jan 8;52(1):228-38. doi: 10.1021/bi301483z. Epub 2012 Dec 20.

12.

A catalytic mechanism revealed by the crystal structures of the imidazolonepropionase from Bacillus subtilis.

Yu Y, Liang YH, Brostromer E, Quan JM, Panjikar S, Dong YH, Su XD.

J Biol Chem. 2006 Dec 1;281(48):36929-36. Epub 2006 Sep 21.

13.

Mechanism of the quorum-quenching lactonase (AiiA) from Bacillus thuringiensis. 1. Product-bound structures.

Liu D, Momb J, Thomas PW, Moulin A, Petsko GA, Fast W, Ringe D.

Biochemistry. 2008 Jul 22;47(29):7706-14. doi: 10.1021/bi800368y.

14.

Structure and catalytic mechanism of LigI: insight into the amidohydrolase enzymes of cog3618 and lignin degradation.

Hobbs ME, Malashkevich V, Williams HJ, Xu C, Sauder JM, Burley SK, Almo SC, Raushel FM.

Biochemistry. 2012 Apr 24;51(16):3497-507. doi: 10.1021/bi300307b. Epub 2012 Apr 9.

15.

Crystal structure of creatininase from Pseudomonas putida: a novel fold and a case of convergent evolution.

Beuth B, Niefind K, Schomburg D.

J Mol Biol. 2003 Sep 5;332(1):287-301.

PMID:
12946365
16.
17.

Crystal structure of N-carbamyl-D-amino acid amidohydrolase with a novel catalytic framework common to amidohydrolases.

Nakai T, Hasegawa T, Yamashita E, Yamamoto M, Kumasaka T, Ueki T, Nanba H, Ikenaka Y, Takahashi S, Sato M, Tsukihara T.

Structure. 2000 Jul 15;8(7):729-37.

18.

Structure of a sedoheptulose 7-phosphate cyclase: ValA from Streptomyces hygroscopicus.

Kean KM, Codding SJ, Asamizu S, Mahmud T, Karplus PA.

Biochemistry. 2014 Jul 8;53(26):4250-60. doi: 10.1021/bi5003508. Epub 2014 Jun 25. Erratum in: Biochemistry. 2014 Jul 8;53(26):4316.

19.

Crystal structure of D-aminoacylase from Alcaligenes faecalis DA1. A novel subset of amidohydrolases and insights into the enzyme mechanism.

Liaw SH, Chen SJ, Ko TP, Hsu CS, Chen CJ, Wang AH, Tsai YC.

J Biol Chem. 2003 Feb 14;278(7):4957-62. Epub 2002 Nov 25.

20.

Function discovery and structural characterization of a methylphosphonate esterase.

Xiang DF, Patskovsky Y, Nemmara VV, Toro R, Almo SC, Raushel FM.

Biochemistry. 2015 May 12;54(18):2919-30. doi: 10.1021/acs.biochem.5b00199. Epub 2015 Apr 28.

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