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Items: 1 to 20 of 79

1.

Standards for sequencing viral genomes in the era of high-throughput sequencing.

Ladner JT, Beitzel B, Chain PS, Davenport MG, Donaldson EF, Frieman M, Kugelman JR, Kuhn JH, O'Rear J, Sabeti PC, Wentworth DE, Wiley MR, Yu GY; Threat Characterization Consortium, Sozhamannan S, Bradburne C, Palacios G.

MBio. 2014 Jun 17;5(3):e01360-14. doi: 10.1128/mBio.01360-14.

2.

Standard finishing categories for high-throughput sequencing of viral genomes.

Ladner JT, Kuhn JH, Palacios G.

Rev Sci Tech. 2016 Apr;35(1):43-52. doi: 10.20506/rst.35.1.2416. Review.

PMID:
27217167
3.

Reply to "Expanding the conversation on high-throughput virome sequencing standards to include consideration of microbial contamination sources".

Ladner JT, Wiley MR, Palacios G.

MBio. 2014 Oct 28;5(6):e02084. doi: 10.1128/mBio.02084-14. No abstract available.

4.

Expanding the conversation on high-throughput virome sequencing standards to include consideration of microbial contamination sources.

Strong MJ, Lin Z, Flemington EK.

MBio. 2014 Oct 28;5(6):e01989. doi: 10.1128/mBio.01989-14. No abstract available.

5.

Bioinformatics tools for analysing viral genomic data.

Orton RJ, Gu Q, Hughes J, Maabar M, Modha S, Vattipally SB, Wilkie GS, Davison AJ.

Rev Sci Tech. 2016 Apr;35(1):271-85. doi: 10.20506/rst.35.1.2432. Review.

PMID:
27217183
6.

V-GAP: Viral genome assembly pipeline.

Nakamura Y, Yasuike M, Nishiki I, Iwasaki Y, Fujiwara A, Kawato Y, Nakai T, Nagai S, Kobayashi T, Gojobori T, Ototake M.

Gene. 2016 Feb 1;576(2 Pt 1):676-80. doi: 10.1016/j.gene.2015.10.029. Epub 2015 Oct 22.

7.

Sherlock Genomes - viral investigator.

Smith SE, Wash RS.

Nat Rev Microbiol. 2013 Mar;11(3):150. doi: 10.1038/nrmicro2979.

PMID:
23411861
8.

From deep sequencing to viral tagging: recent advances in viral metagenomics.

Willner D, Hugenholtz P.

Bioessays. 2013 May;35(5):436-42. doi: 10.1002/bies.201200174. Epub 2013 Mar 1. Review.

9.

Viral detection by high-throughput sequencing.

Motooka D, Nakamura S, Hagiwara K, Nakaya T.

Methods Mol Biol. 2015;1236:125-34. doi: 10.1007/978-1-4939-1743-3_11.

PMID:
25287501
10.

[Utility of high throughput sequencing technology in analyzing the terminal sequence of caudovirales bacteriophage genome].

Li SS, Fan H, An XP, Fan HH, Jiang HH, Mi ZQ, Tong YG.

Bing Du Xue Bao. 2013 Jan;29(1):39-43. Chinese.

PMID:
23547378
11.

Whole-Genome Sequencing of a Single Viral Species from a Highly Heterogeneous Sample.

Han HS, Cantalupo PG, Rotem A, Cockrell SK, Carbonnaux M, Pipas JM, Weitz DA.

Angew Chem Int Ed Engl. 2015 Nov 16;54(47):13985-8. doi: 10.1002/anie.201507047. Epub 2015 Aug 28.

12.

Low-Cost, High-Throughput Sequencing of DNA Assemblies Using a Highly Multiplexed Nextera Process.

Shapland EB, Holmes V, Reeves CD, Sorokin E, Durot M, Platt D, Allen C, Dean J, Serber Z, Newman J, Chandran S.

ACS Synth Biol. 2015 Jul 17;4(7):860-6. doi: 10.1021/sb500362n. Epub 2015 May 6.

PMID:
25913499
13.

Next generation sequencing of viral RNA genomes.

Marston DA, McElhinney LM, Ellis RJ, Horton DL, Wise EL, Leech SL, David D, de Lamballerie X, Fooks AR.

BMC Genomics. 2013 Jul 4;14:444. doi: 10.1186/1471-2164-14-444.

14.

[The principle and application of the single-molecule real-time sequencing technology].

Yanhu L, Lu W, Li Y.

Yi Chuan. 2015 Mar;37(3):259-68. doi: 10.16288/j.yczz.14-323. Review. Chinese.

PMID:
25787000
15.

Applications of next-generation sequencing technologies to diagnostic virology.

Barzon L, Lavezzo E, Militello V, Toppo S, Palù G.

Int J Mol Sci. 2011;12(11):7861-84. doi: 10.3390/ijms12117861. Epub 2011 Nov 14. Review.

16.

Next-generation sequencing technologies in diagnostic virology.

Barzon L, Lavezzo E, Costanzi G, Franchin E, Toppo S, Palù G.

J Clin Virol. 2013 Oct;58(2):346-50. doi: 10.1016/j.jcv.2013.03.003. Epub 2013 Mar 21. Review.

PMID:
23523339
17.

Comparison of three next-generation sequencing platforms for metagenomic sequencing and identification of pathogens in blood.

Frey KG, Herrera-Galeano JE, Redden CL, Luu TV, Servetas SL, Mateczun AJ, Mokashi VP, Bishop-Lilly KA.

BMC Genomics. 2014 Feb 4;15:96. doi: 10.1186/1471-2164-15-96.

18.

Computational framework for next-generation sequencing of heterogeneous viral populations using combinatorial pooling.

Skums P, Artyomenko A, Glebova O, Ramachandran S, Mandoiu I, Campo DS, Dimitrova Z, Zelikovsky A, Khudyakov Y.

Bioinformatics. 2015 Mar 1;31(5):682-90. doi: 10.1093/bioinformatics/btu726. Epub 2014 Oct 29.

PMID:
25359889
19.

Simultaneous rapid sequencing of multiple RNA virus genomes.

Neill JD, Bayles DO, Ridpath JF.

J Virol Methods. 2014 Jun;201:68-72. doi: 10.1016/j.jviromet.2014.02.016. Epub 2014 Feb 28.

20.

Application of next-generation sequencing technologies in virology.

Radford AD, Chapman D, Dixon L, Chantrey J, Darby AC, Hall N.

J Gen Virol. 2012 Sep;93(Pt 9):1853-68. doi: 10.1099/vir.0.043182-0. Epub 2012 May 30. Review.

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