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Items: 1 to 20 of 180

1.

Time between collection and storage significantly influences bacterial sequence composition in sputum samples from cystic fibrosis respiratory infections.

Cuthbertson L, Rogers GB, Walker AW, Oliver A, Hafiz T, Hoffman LR, Carroll MP, Parkhill J, Bruce KD, van der Gast CJ.

J Clin Microbiol. 2014 Aug;52(8):3011-6. doi: 10.1128/JCM.00764-14. Epub 2014 Jun 11.

2.

Cohort Study of Airway Mycobiome in Adult Cystic Fibrosis Patients: Differences in Community Structure between Fungi and Bacteria Reveal Predominance of Transient Fungal Elements.

Kramer R, Sauer-Heilborn A, Welte T, Guzman CA, Abraham WR, Höfle MG.

J Clin Microbiol. 2015 Sep;53(9):2900-7. doi: 10.1128/JCM.01094-15. Epub 2015 Jul 1.

3.

Assessment of sample handling practices on microbial activity in sputum samples from patients with cystic fibrosis.

Nelson A, De Soyza A, Bourke SJ, Perry JD, Cummings SP.

Lett Appl Microbiol. 2010 Sep;51(3):272-7. doi: 10.1111/j.1472-765X.2010.02891.x. Epub 2010 Jun 20.

4.

Microbial diversity in the sputum of a cystic fibrosis patient studied with 16S rDNA pyrosequencing.

Armougom F, Bittar F, Stremler N, Rolain JM, Robert C, Dubus JC, Sarles J, Raoult D, La Scola B.

Eur J Clin Microbiol Infect Dis. 2009 Sep;28(9):1151-4. doi: 10.1007/s10096-009-0749-x. Epub 2009 May 16.

PMID:
19449045
5.
6.

Determining cystic fibrosis-affected lung microbiology: comparison of spontaneous and serially induced sputum samples by use of terminal restriction fragment length polymorphism profiling.

Rogers GB, Skelton S, Serisier DJ, van der Gast CJ, Bruce KD.

J Clin Microbiol. 2010 Jan;48(1):78-86. doi: 10.1128/JCM.01324-09. Epub 2009 Nov 11.

7.

Fungal and Bacterial Diversity of Airway Microbiota in Adults with Cystic Fibrosis: Concordance Between Conventional Methods and Ultra-Deep Sequencing, and Their Practical use in the Clinical Laboratory.

Botterel F, Angebault C, Cabaret O, Stressmann FA, Costa JM, Wallet F, Wallaert B, Bruce K, Delhaes L.

Mycopathologia. 2018 Feb;183(1):171-183. doi: 10.1007/s11046-017-0185-x. Epub 2017 Aug 1.

PMID:
28766039
8.

Implications of multiple freeze-thawing on respiratory samples for culture-independent analyses.

Cuthbertson L, Rogers GB, Walker AW, Oliver A, Hoffman LR, Carroll MP, Parkhill J, Bruce KD, van der Gast CJ.

J Cyst Fibros. 2015 Jul;14(4):464-7. doi: 10.1016/j.jcf.2014.10.004. Epub 2014 Oct 24.

9.

Comparison of conventional and molecular methods for the detection of bacterial pathogens in sputum samples from cystic fibrosis patients.

van Belkum A, Renders NH, Smith S, Overbeek SE, Verbrugh HA.

FEMS Immunol Med Microbiol. 2000 Jan;27(1):51-7.

10.

Rapid Detection of Emerging Pathogens and Loss of Microbial Diversity Associated with Severe Lung Disease in Cystic Fibrosis.

Flight WG, Smith A, Paisey C, Marchesi JR, Bull MJ, Norville PJ, Mutton KJ, Webb AK, Bright-Thomas RJ, Jones AM, Mahenthiralingam E.

J Clin Microbiol. 2015 Jul;53(7):2022-9. doi: 10.1128/JCM.00432-15. Epub 2015 Apr 15.

11.

Analysis of the bacterial communities present in lungs of patients with cystic fibrosis from American and British centers.

Stressmann FA, Rogers GB, Klem ER, Lilley AK, Donaldson SH, Daniels TW, Carroll MP, Patel N, Forbes B, Boucher RC, Wolfgang MC, Bruce KD.

J Clin Microbiol. 2011 Jan;49(1):281-91. doi: 10.1128/JCM.01650-10. Epub 2010 Nov 10.

12.

Reducing bias in bacterial community analysis of lower respiratory infections.

Rogers GB, Cuthbertson L, Hoffman LR, Wing PA, Pope C, Hooftman DA, Lilley AK, Oliver A, Carroll MP, Bruce KD, van der Gast CJ.

ISME J. 2013 Apr;7(4):697-706. doi: 10.1038/ismej.2012.145. Epub 2012 Nov 29.

13.

Comparison of stool versus rectal swab samples and storage conditions on bacterial community profiles.

Bassis CM, Moore NM, Lolans K, Seekatz AM, Weinstein RA, Young VB, Hayden MK; CDC Prevention Epicenters Program.

BMC Microbiol. 2017 Mar 31;17(1):78. doi: 10.1186/s12866-017-0983-9.

14.

Culture-Based and Culture-Independent Bacteriologic Analysis of Cystic Fibrosis Respiratory Specimens.

Mahboubi MA, Carmody LA, Foster BK, Kalikin LM, VanDevanter DR, LiPuma JJ.

J Clin Microbiol. 2016 Mar;54(3):613-9. doi: 10.1128/JCM.02299-15. Epub 2015 Dec 23.

15.

Analysis of the microbiota of sputum samples from patients with lower respiratory tract infections.

Zhou Y, Lin P, Li Q, Han L, Zheng H, Wei Y, Cui Z, Ni Y, Guo X.

Acta Biochim Biophys Sin (Shanghai). 2010 Oct;42(10):754-61. doi: 10.1093/abbs/gmq081. Epub 2010 Sep 7.

PMID:
20823075
16.

Effects of Specimen Collection Methodologies and Storage Conditions on the Short-Term Stability of Oral Microbiome Taxonomy.

Luo T, Srinivasan U, Ramadugu K, Shedden KA, Neiswanger K, Trumble E, Li JJ, McNeil DW, Crout RJ, Weyant RJ, Marazita ML, Foxman B.

Appl Environ Microbiol. 2016 Aug 30;82(18):5519-29. doi: 10.1128/AEM.01132-16. Print 2016 Sep 15.

17.

The genus Prevotella in cystic fibrosis airways.

Field TR, Sibley CD, Parkins MD, Rabin HR, Surette MG.

Anaerobe. 2010 Aug;16(4):337-44. doi: 10.1016/j.anaerobe.2010.04.002. Epub 2010 Apr 20.

PMID:
20412865
18.

Effect of storage conditions on the assessment of bacterial community structure in soil and human-associated samples.

Lauber CL, Zhou N, Gordon JI, Knight R, Fierer N.

FEMS Microbiol Lett. 2010 Jun;307(1):80-6. doi: 10.1111/j.1574-6968.2010.01965.x. Epub 2010 Mar 25.

19.
20.

Rapid 16S rRNA next-generation sequencing of polymicrobial clinical samples for diagnosis of complex bacterial infections.

Salipante SJ, Sengupta DJ, Rosenthal C, Costa G, Spangler J, Sims EH, Jacobs MA, Miller SI, Hoogestraat DR, Cookson BT, McCoy C, Matsen FA, Shendure J, Lee CC, Harkins TT, Hoffman NG.

PLoS One. 2013 May 29;8(5):e65226. doi: 10.1371/journal.pone.0065226. Print 2013.

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