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Items: 1 to 20 of 85

1.

Integrating the interactome and the transcriptome of Drosophila.

Murali T, Pacifico S, Finley RL Jr.

BMC Bioinformatics. 2014 Jun 10;15:177. doi: 10.1186/1471-2105-15-177.

2.

Analysis of Drosophila melanogaster testis transcriptome.

Vedelek V, Bodai L, Grézal G, Kovács B, Boros IM, Laurinyecz B, Sinka R.

BMC Genomics. 2018 Sep 24;19(1):697. doi: 10.1186/s12864-018-5085-z.

3.

Transcription factor networks in Drosophila melanogaster.

Rhee DY, Cho DY, Zhai B, Slattery M, Ma L, Mintseris J, Wong CY, White KP, Celniker SE, Przytycka TM, Gygi SP, Obar RA, Artavanis-Tsakonas S.

Cell Rep. 2014 Sep 25;8(6):2031-2043. doi: 10.1016/j.celrep.2014.08.038. Epub 2014 Sep 18.

4.

Identification of cis-regulatory modules encoding temporal dynamics during development.

Potier D, Seyres D, Guichard C, Iche-Torres M, Aerts S, Herrmann C, Perrin L.

BMC Genomics. 2014 Jun 27;15:534. doi: 10.1186/1471-2164-15-534.

5.

Integrative analysis of the zinc finger transcription factor Lame duck in the Drosophila myogenic gene regulatory network.

Busser BW, Huang D, Rogacki KR, Lane EA, Shokri L, Ni T, Gamble CE, Gisselbrecht SS, Zhu J, Bulyk ML, Ovcharenko I, Michelson AM.

Proc Natl Acad Sci U S A. 2012 Dec 11;109(50):20768-73. doi: 10.1073/pnas.1210415109. Epub 2012 Nov 26.

6.

Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks.

Marbach D, Roy S, Ay F, Meyer PE, Candeias R, Kahveci T, Bristow CA, Kellis M.

Genome Res. 2012 Jul;22(7):1334-49. doi: 10.1101/gr.127191.111. Epub 2012 Mar 28.

7.

Gene expression profiling of selenophosphate synthetase 2 knockdown in Drosophila melanogaster.

Li G, Liu L, Li P, Chen L, Song H, Zhang Y.

Metallomics. 2016 Mar;8(3):354-65. doi: 10.1039/c5mt00134j.

PMID:
26824785
8.

Integrating transcriptional and protein interaction networks to prioritize condition-specific master regulators.

Padi M, Quackenbush J.

BMC Syst Biol. 2015 Nov 14;9:80. doi: 10.1186/s12918-015-0228-1.

9.

Inhibitory activities of short linear motifs underlie Hox interactome specificity in vivo.

Baëza M, Viala S, Heim M, Dard A, Hudry B, Duffraisse M, Rogulja-Ortmann A, Brun C, Merabet S.

Elife. 2015 Apr 14;4. doi: 10.7554/eLife.06034.

10.

A compendium of human genes regulating feeding behavior and body weight, its functional characterization and identification of GWAS genes involved in brain-specific PPI network.

Ignatieva EV, Afonnikov DA, Saik OV, Rogaev EI, Kolchanov NA.

BMC Genet. 2016 Dec 22;17(Suppl 3):158. doi: 10.1186/s12863-016-0466-2.

11.

Construction and analyses of human large-scale tissue specific networks.

Liu W, Wang J, Wang T, Xie H.

PLoS One. 2014 Dec 16;9(12):e115074. doi: 10.1371/journal.pone.0115074. eCollection 2014.

12.

Integrative analysis of young genes, positively selected genes and lncRNAs in the development of Drosophila melanogaster.

Liu HQ, Li Y, Irwin DM, Zhang YP, Wu DD.

BMC Evol Biol. 2014 Dec 4;14:241. doi: 10.1186/s12862-014-0241-9.

13.

Functional integrative levels in the human interactome recapitulate organ organization.

Souiai O, Becker E, Prieto C, Benkahla A, De las Rivas J, Brun C.

PLoS One. 2011;6(7):e22051. doi: 10.1371/journal.pone.0022051. Epub 2011 Jul 20.

14.

Testis-specific TAF homologs collaborate to control a tissue-specific transcription program.

Hiller M, Chen X, Pringle MJ, Suchorolski M, Sancak Y, Viswanathan S, Bolival B, Lin TY, Marino S, Fuller MT.

Development. 2004 Nov;131(21):5297-308. Epub 2004 Sep 29.

15.

Understanding Tissue-Specific Gene Regulation.

Sonawane AR, Platig J, Fagny M, Chen CY, Paulson JN, Lopes-Ramos CM, DeMeo DL, Quackenbush J, Glass K, Kuijjer ML.

Cell Rep. 2017 Oct 24;21(4):1077-1088. doi: 10.1016/j.celrep.2017.10.001.

16.

Protein interaction mapping: a Drosophila case study.

Formstecher E, Aresta S, Collura V, Hamburger A, Meil A, Trehin A, Reverdy C, Betin V, Maire S, Brun C, Jacq B, Arpin M, Bellaiche Y, Bellusci S, Benaroch P, Bornens M, Chanet R, Chavrier P, Delattre O, Doye V, Fehon R, Faye G, Galli T, Girault JA, Goud B, de Gunzburg J, Johannes L, Junier MP, Mirouse V, Mukherjee A, Papadopoulo D, Perez F, Plessis A, Rossé C, Saule S, Stoppa-Lyonnet D, Vincent A, White M, Legrain P, Wojcik J, Camonis J, Daviet L.

Genome Res. 2005 Mar;15(3):376-84. Epub 2005 Feb 14.

17.

Genome-wide identification of Grainy head targets in Drosophila reveals regulatory interactions with the POU domain transcription factor Vvl.

Yao L, Wang S, Westholm JO, Dai Q, Matsuda R, Hosono C, Bray S, Lai EC, Samakovlis C.

Development. 2017 Sep 1;144(17):3145-3155. doi: 10.1242/dev.143297. Epub 2017 Jul 31.

18.

DroID: the Drosophila Interactions Database, a comprehensive resource for annotated gene and protein interactions.

Yu J, Pacifico S, Liu G, Finley RL Jr.

BMC Genomics. 2008 Oct 7;9:461. doi: 10.1186/1471-2164-9-461.

19.

t-LSE: a novel robust geometric approach for modeling protein-protein interaction networks.

Zhu L, You ZH, Huang DS, Wang B.

PLoS One. 2013;8(4):e58368. doi: 10.1371/journal.pone.0058368. Epub 2013 Apr 1.

20.

Bio::Homology::InterologWalk--a Perl module to build putative protein-protein interaction networks through interolog mapping.

Gallone G, Simpson TI, Armstrong JD, Jarman AP.

BMC Bioinformatics. 2011 Jul 18;12:289. doi: 10.1186/1471-2105-12-289.

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