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Items: 1 to 20 of 70

1.

Allele-specific methylation occurs at genetic variants associated with complex disease.

Hutchinson JN, Raj T, Fagerness J, Stahl E, Viloria FT, Gimelbrant A, Seddon J, Daly M, Chess A, Plenge R.

PLoS One. 2014 Jun 9;9(6):e98464. doi: 10.1371/journal.pone.0098464. eCollection 2014.

2.

Allele-specific methylation in the human genome: implications for genetic studies of complex disease.

Meaburn EL, Schalkwyk LC, Mill J.

Epigenetics. 2010 Oct 1;5(7):578-82. doi: 10.4161/epi.5.7.12960. Epub 2010 Oct 1. Review.

3.

Functional variation in allelic methylomes underscores a strong genetic contribution and reveals novel epigenetic alterations in the human epigenome.

Cheung WA, Shao X, Morin A, Siroux V, Kwan T, Ge B, Aïssi D, Chen L, Vasquez L, Allum F, Guénard F, Bouzigon E, Simon MM, Boulier E, Redensek A, Watt S, Datta A, Clarke L, Flicek P, Mead D, Paul DS, Beck S, Bourque G, Lathrop M, Tchernof A, Vohl MC, Demenais F, Pin I, Downes K, Stunnenberg HG, Soranzo N, Pastinen T, Grundberg E.

Genome Biol. 2017 Mar 10;18(1):50. doi: 10.1186/s13059-017-1173-7. Erratum in: Genome Biol. 2019 May 7;20(1):89.

4.

A pooling-based approach to mapping genetic variants associated with DNA methylation.

Kaplow IM, MacIsaac JL, Mah SM, McEwen LM, Kobor MS, Fraser HB.

Genome Res. 2015 Jun;25(6):907-17. doi: 10.1101/gr.183749.114. Epub 2015 Apr 24.

5.

Allelic skewing of DNA methylation is widespread across the genome.

Schalkwyk LC, Meaburn EL, Smith R, Dempster EL, Jeffries AR, Davies MN, Plomin R, Mill J.

Am J Hum Genet. 2010 Feb 12;86(2):196-212. doi: 10.1016/j.ajhg.2010.01.014.

6.

Allele-Skewed DNA Modification in the Brain: Relevance to a Schizophrenia GWAS.

Gagliano SA, Ptak C, Mak DYF, Shamsi M, Oh G, Knight J, Boutros PC, Petronis A.

Am J Hum Genet. 2016 May 5;98(5):956-962. doi: 10.1016/j.ajhg.2016.03.006. Epub 2016 Apr 14.

7.

Characterization of genome-methylome interactions in 22 nuclear pedigrees.

Plongthongkum N, van Eijk KR, de Jong S, Wang T, Sul JH, Boks MP, Kahn RS, Fung HL, Ophoff RA, Zhang K.

PLoS One. 2014 Jul 14;9(7):e99313. doi: 10.1371/journal.pone.0099313. eCollection 2014.

8.

Adult porcine genome-wide DNA methylation patterns support pigs as a biomedical model.

Schachtschneider KM, Madsen O, Park C, Rund LA, Groenen MA, Schook LB.

BMC Genomics. 2015 Oct 5;16:743. doi: 10.1186/s12864-015-1938-x.

9.

Mapping allele-specific DNA methylation: a new tool for maximizing information from GWAS.

Tycko B.

Am J Hum Genet. 2010 Feb 12;86(2):109-12. doi: 10.1016/j.ajhg.2010.01.021.

10.

Tissue-specific patterns of allelically-skewed DNA methylation.

Marzi SJ, Meaburn EL, Dempster EL, Lunnon K, Paya-Cano JL, Smith RG, Volta M, Troakes C, Schalkwyk LC, Mill J.

Epigenetics. 2016;11(1):24-35. doi: 10.1080/15592294.2015.1127479. Epub 2016 Jan 19.

11.
12.

Crosstalk of Genetic Variants, Allele-Specific DNA Methylation, and Environmental Factors for Complex Disease Risk.

Wang H, Lou D, Wang Z.

Front Genet. 2019 Jan 9;9:695. doi: 10.3389/fgene.2018.00695. eCollection 2018. Review.

13.

Large-scale East-Asian eQTL mapping reveals novel candidate genes for LD mapping and the genomic landscape of transcriptional effects of sequence variants.

Narahara M, Higasa K, Nakamura S, Tabara Y, Kawaguchi T, Ishii M, Matsubara K, Matsuda F, Yamada R.

PLoS One. 2014 Jun 23;9(6):e100924. doi: 10.1371/journal.pone.0100924. eCollection 2014.

14.

Molecular genetic studies of complex phenotypes.

Marian AJ.

Transl Res. 2012 Feb;159(2):64-79. doi: 10.1016/j.trsl.2011.08.001. Epub 2011 Aug 31. Review.

15.

Mechanisms and Disease Associations of Haplotype-Dependent Allele-Specific DNA Methylation.

Do C, Lang CF, Lin J, Darbary H, Krupska I, Gaba A, Petukhova L, Vonsattel JP, Gallagher MP, Goland RS, Clynes RA, Dwork A, Kral JG, Monk C, Christiano AM, Tycko B.

Am J Hum Genet. 2016 May 5;98(5):934-955. doi: 10.1016/j.ajhg.2016.03.027.

16.

Allele-specific methylation is prevalent and is contributed by CpG-SNPs in the human genome.

Shoemaker R, Deng J, Wang W, Zhang K.

Genome Res. 2010 Jul;20(7):883-9. doi: 10.1101/gr.104695.109. Epub 2010 Apr 23.

17.

Genetic control of individual differences in gene-specific methylation in human brain.

Zhang D, Cheng L, Badner JA, Chen C, Chen Q, Luo W, Craig DW, Redman M, Gershon ES, Liu C.

Am J Hum Genet. 2010 Mar 12;86(3):411-9. doi: 10.1016/j.ajhg.2010.02.005.

18.

Genome-wide allele-specific analysis: insights into regulatory variation.

Pastinen T.

Nat Rev Genet. 2010 Aug;11(8):533-8. doi: 10.1038/nrg2815. Epub 2010 Jun 22. Review.

PMID:
20567245
19.

Allele-specific DNA methylation in mouse strains is mainly determined by cis-acting sequences.

Schilling E, El Chartouni C, Rehli M.

Genome Res. 2009 Nov;19(11):2028-35. doi: 10.1101/gr.095562.109. Epub 2009 Aug 17.

20.

Combinatorial effects of multiple enhancer variants in linkage disequilibrium dictate levels of gene expression to confer susceptibility to common traits.

Corradin O, Saiakhova A, Akhtar-Zaidi B, Myeroff L, Willis J, Cowper-Sal lari R, Lupien M, Markowitz S, Scacheri PC.

Genome Res. 2014 Jan;24(1):1-13. doi: 10.1101/gr.164079.113. Epub 2013 Nov 6.

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