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Exploration of bacterial community classes in major human habitats.

Zhou Y, Mihindukulasuriya KA, Gao H, La Rosa PS, Wylie KM, Martin JC, Kota K, Shannon WD, Mitreva M, Sodergren E, Weinstock GM.

Genome Biol. 2014 May 7;15(5):R66. doi: 10.1186/gb-2014-15-5-r66.


Bacterial community variation in human body habitats across space and time.

Costello EK, Lauber CL, Hamady M, Fierer N, Gordon JI, Knight R.

Science. 2009 Dec 18;326(5960):1694-7. doi: 10.1126/science.1177486. Epub 2009 Nov 5.


Analyses of the stability and core taxonomic memberships of the human microbiome.

Li K, Bihan M, Methé BA.

PLoS One. 2013 May 6;8(5):e63139. doi: 10.1371/journal.pone.0063139. Print 2013.


Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns.

Dominguez-Bello MG, Costello EK, Contreras M, Magris M, Hidalgo G, Fierer N, Knight R.

Proc Natl Acad Sci U S A. 2010 Jun 29;107(26):11971-5. doi: 10.1073/pnas.1002601107. Epub 2010 Jun 21.


Composition of the adult digestive tract bacterial microbiome based on seven mouth surfaces, tonsils, throat and stool samples.

Segata N, Haake SK, Mannon P, Lemon KP, Waldron L, Gevers D, Huttenhower C, Izard J.

Genome Biol. 2012 Jun 14;13(6):R42. doi: 10.1186/gb-2012-13-6-r42.


Temporal dynamics of the human vaginal microbiota.

Gajer P, Brotman RM, Bai G, Sakamoto J, Schütte UM, Zhong X, Koenig SS, Fu L, Ma ZS, Zhou X, Abdo Z, Forney LJ, Ravel J.

Sci Transl Med. 2012 May 2;4(132):132ra52. doi: 10.1126/scitranslmed.3003605.


Characterization of vaginal microbial communities in adult healthy women using cultivation-independent methods.

Zhou X, Bent SJ, Schneider MG, Davis CC, Islam MR, Forney LJ.

Microbiology. 2004 Aug;150(Pt 8):2565-73.


Temporal variability is a personalized feature of the human microbiome.

Flores GE, Caporaso JG, Henley JB, Rideout JR, Domogala D, Chase J, Leff JW, Vázquez-Baeza Y, Gonzalez A, Knight R, Dunn RR, Fierer N.

Genome Biol. 2014 Dec 3;15(12):531. doi: 10.1186/s13059-014-0531-y.


Effects of tampons and menses on the composition and diversity of vaginal microbial communities over time.

Hickey RJ, Abdo Z, Zhou X, Nemeth K, Hansmann M, Osborn TW 3rd, Wang F, Forney LJ.

BJOG. 2013 May;120(6):695-704; discussion 704-6. doi: 10.1111/1471-0528.12151. Epub 2013 Feb 11.


Differences in the composition of vaginal microbial communities found in healthy Caucasian and black women.

Zhou X, Brown CJ, Abdo Z, Davis CC, Hansmann MA, Joyce P, Foster JA, Forney LJ.

ISME J. 2007 Jun;1(2):121-33. Epub 2007 May 10.


Pyrosequencing analysis of the human microbiota of healthy Chinese undergraduates.

Ling Z, Liu X, Luo Y, Yuan L, Nelson KE, Wang Y, Xiang C, Li L.

BMC Genomics. 2013 Jun 10;14:390. doi: 10.1186/1471-2164-14-390.


Dynamics and associations of microbial community types across the human body.

Ding T, Schloss PD.

Nature. 2014 May 15;509(7500):357-60. doi: 10.1038/nature13178. Epub 2014 Apr 16.


Preliminary characterization of the oral microbiota of Chinese adults with and without gingivitis.

Huang S, Yang F, Zeng X, Chen J, Li R, Wen T, Li C, Wei W, Liu J, Chen L, Davis C, Xu J.

BMC Oral Health. 2011 Dec 12;11:33. doi: 10.1186/1472-6831-11-33.


Diversity and dynamics of bacteriocins from human microbiome.

Zheng J, Gänzle MG, Lin XB, Ruan L, Sun M.

Environ Microbiol. 2015 Jun;17(6):2133-43. doi: 10.1111/1462-2920.12662. Epub 2014 Dec 17.


A core human microbiome as viewed through 16S rRNA sequence clusters.

Huse SM, Ye Y, Zhou Y, Fodor AA.

PLoS One. 2012;7(6):e34242. doi: 10.1371/journal.pone.0034242. Epub 2012 Jun 13.


Stool consistency is strongly associated with gut microbiota richness and composition, enterotypes and bacterial growth rates.

Vandeputte D, Falony G, Vieira-Silva S, Tito RY, Joossens M, Raes J.

Gut. 2016 Jan;65(1):57-62. doi: 10.1136/gutjnl-2015-309618. Epub 2015 Jun 11.


Biogeography of the ecosystems of the healthy human body.

Zhou Y, Gao H, Mihindukulasuriya KA, La Rosa PS, Wylie KM, Vishnivetskaya T, Podar M, Warner B, Tarr PI, Nelson DE, Fortenberry JD, Holland MJ, Burr SE, Shannon WD, Sodergren E, Weinstock GM.

Genome Biol. 2013 Jan 14;14(1):R1. doi: 10.1186/gb-2013-14-1-r1.


The oral microbiome diversity and its relation to human diseases.

He J, Li Y, Cao Y, Xue J, Zhou X.

Folia Microbiol (Praha). 2015 Jan;60(1):69-80. doi: 10.1007/s12223-014-0342-2. Epub 2014 Aug 23. Review.


A guide to enterotypes across the human body: meta-analysis of microbial community structures in human microbiome datasets.

Koren O, Knights D, Gonzalez A, Waldron L, Segata N, Knight R, Huttenhower C, Ley RE.

PLoS Comput Biol. 2013;9(1):e1002863. doi: 10.1371/journal.pcbi.1002863. Epub 2013 Jan 10.


The Influence of Age and Gender on Skin-Associated Microbial Communities in Urban and Rural Human Populations.

Ying S, Zeng DN, Chi L, Tan Y, Galzote C, Cardona C, Lax S, Gilbert J, Quan ZX.

PLoS One. 2015 Oct 28;10(10):e0141842. doi: 10.1371/journal.pone.0141842. eCollection 2015.

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