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Items: 1 to 20 of 196

1.

MPBind: a Meta-motif-based statistical framework and pipeline to Predict Binding potential of SELEX-derived aptamers.

Jiang P, Meyer S, Hou Z, Propson NE, Soh HT, Thomson JA, Stewart R.

Bioinformatics. 2014 Sep 15;30(18):2665-7. doi: 10.1093/bioinformatics/btu348. Epub 2014 May 28.

2.

A simple method for eliminating fixed-region interference of aptamer binding during SELEX.

Ouellet E, Lagally ET, Cheung KC, Haynes CA.

Biotechnol Bioeng. 2014 Nov;111(11):2265-79. doi: 10.1002/bit.25294. Epub 2014 Jul 14.

PMID:
24895227
3.

The Effects of SELEX Conditions on the Resultant Aptamer Pools in the Selection of Aptamers Binding to Bacterial Cells.

Hamula CL, Peng H, Wang Z, Newbigging AM, Tyrrell GJ, Li XF, Le XC.

J Mol Evol. 2015 Dec;81(5-6):194-209. doi: 10.1007/s00239-015-9711-y. Epub 2015 Nov 4.

PMID:
26538121
4.

Cell-SELEX: in vitro selection of synthetic small specific ligands.

Dickinson H, Lukasser M, Mayer G, Hüttenhofer A.

Methods Mol Biol. 2015;1296:213-24. doi: 10.1007/978-1-4939-2547-6_20.

PMID:
25791604
5.

APTANI: a computational tool to select aptamers through sequence-structure motif analysis of HT-SELEX data.

Caroli J, Taccioli C, De La Fuente A, Serafini P, Bicciato S.

Bioinformatics. 2016 Jan 15;32(2):161-4. doi: 10.1093/bioinformatics/btv545. Epub 2015 Sep 22.

PMID:
26395772
7.

Large scale analysis of the mutational landscape in HT-SELEX improves aptamer discovery.

Hoinka J, Berezhnoy A, Dao P, Sauna ZE, Gilboa E, Przytycka TM.

Nucleic Acids Res. 2015 Jul 13;43(12):5699-707. doi: 10.1093/nar/gkv308. Epub 2015 Apr 13.

8.

Searching the Sequence Space for Potent Aptamers Using SELEX in Silico.

Zhou Q, Xia X, Luo Z, Liang H, Shakhnovich E.

J Chem Theory Comput. 2015 Dec 8;11(12):5939-46. doi: 10.1021/acs.jctc.5b00707. Epub 2015 Nov 5.

PMID:
26642994
9.
10.

Characterisation of aptamer-target interactions by branched selection and high-throughput sequencing of SELEX pools.

Dupont DM, Larsen N, Jensen JK, Andreasen PA, Kjems J.

Nucleic Acids Res. 2015 Dec 2;43(21):e139. doi: 10.1093/nar/gkv700. Epub 2015 Jul 10.

11.

HAPIscreen, a method for high-throughput aptamer identification.

Dausse E, Taouji S, Evadé L, Di Primo C, Chevet E, Toulmé JJ.

J Nanobiotechnology. 2011 Jun 3;9:25. doi: 10.1186/1477-3155-9-25.

12.

Selection of an aptamer against mouse GP2 by SELEX.

Hanazato M, Nakato G, Nishikawa F, Hase K, Nishikawa S, Ohno H.

Cell Struct Funct. 2014;39(1):23-9. Epub 2013 Dec 12.

13.

Development of a fraction collection approach in capillary electrophoresis SELEX for aptamer selection.

Luo Z, Zhou H, Jiang H, Ou H, Li X, Zhang L.

Analyst. 2015 Apr 21;140(8):2664-70. doi: 10.1039/c5an00183h. Epub 2015 Mar 2.

PMID:
25728760
14.

Current approaches in SELEX: An update to aptamer selection technology.

Darmostuk M, Rimpelova S, Gbelcova H, Ruml T.

Biotechnol Adv. 2015 Nov 1;33(6 Pt 2):1141-61. doi: 10.1016/j.biotechadv.2015.02.008. Epub 2015 Feb 20. Review.

PMID:
25708387
15.

A combinatorial systematic evolution of ligands by exponential enrichment method for selection of aptamer against protein targets.

Mondal B, Ramlal S, Lavu PS, Murali HS, Batra HV.

Appl Microbiol Biotechnol. 2015 Nov;99(22):9791-803. doi: 10.1007/s00253-015-6858-9. Epub 2015 Aug 21.

PMID:
26293334
16.

Identifying high-affinity aptamer ligands with defined cross-reactivity using high-throughput guided systematic evolution of ligands by exponential enrichment.

Levay A, Brenneman R, Hoinka J, Sant D, Cardone M, Trinchieri G, Przytycka TM, Berezhnoy A.

Nucleic Acids Res. 2015 Jul 13;43(12):e82. doi: 10.1093/nar/gkv534. Epub 2015 May 24.

17.

Single-step selection of bivalent aptamers validated by comparison with SELEX using high-throughput sequencing.

Wilson R, Bourne C, Chaudhuri RR, Gregory R, Kenny J, Cossins A.

PLoS One. 2014 Jun 25;9(6):e100572. doi: 10.1371/journal.pone.0100572. eCollection 2014.

18.

Integrated microfluidic system for rapid screening of CRP aptamers utilizing systematic evolution of ligands by exponential enrichment (SELEX).

Huang CJ, Lin HI, Shiesh SC, Lee GB.

Biosens Bioelectron. 2010 Mar 15;25(7):1761-6. doi: 10.1016/j.bios.2009.12.029. Epub 2009 Dec 28.

PMID:
20061133
19.

Aptamers: multifunctional molecules for biomedical research.

Banerjee J, Nilsen-Hamilton M.

J Mol Med (Berl). 2013 Dec;91(12):1333-42. doi: 10.1007/s00109-013-1085-2. Epub 2013 Sep 18. Review.

PMID:
24045702
20.

Evolution of Cell-Type-Specific RNA Aptamers Via Live Cell-Based SELEX.

Zhou J, Rossi JJ.

Methods Mol Biol. 2016;1421:191-214. doi: 10.1007/978-1-4939-3591-8_16.

PMID:
26965267

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