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Items: 1 to 20 of 291

1.

Studying cancer genomics through next-generation DNA sequencing and bioinformatics.

Doyle MA, Li J, Doig K, Fellowes A, Wong SQ.

Methods Mol Biol. 2014;1168:83-98. doi: 10.1007/978-1-4939-0847-9_6. Review.

PMID:
24870132
2.

Bioinformatics Data Analysis of Next-Generation Sequencing Data from Heterogeneous Tumor Samples.

Landman SR, Hwang TH.

Methods Mol Biol. 2017;1633:185-192. doi: 10.1007/978-1-4939-7142-8_12.

PMID:
28735488
3.

Computational methods for DNA copy-number analysis of tumors.

Kendall J, Krasnitz A.

Methods Mol Biol. 2014;1176:243-59. doi: 10.1007/978-1-4939-0992-6_20.

4.

TumorNext: A comprehensive tumor profiling assay that incorporates high resolution copy number analysis and germline status to improve testing accuracy.

Gray PN, Vuong H, Tsai P, Lu HM, Mu W, Hsuan V, Hoo J, Shah S, Uyeda L, Fox S, Patel H, Janicek M, Brown S, Dobrea L, Wagman L, Plimack E, Mehra R, Golemis EA, Bilusic M, Zibelman M, Elliott A.

Oncotarget. 2016 Oct 18;7(42):68206-68228. doi: 10.18632/oncotarget.11910.

5.

Somatic mutation profiles of MSI and MSS colorectal cancer identified by whole exome next generation sequencing and bioinformatics analysis.

Timmermann B, Kerick M, Roehr C, Fischer A, Isau M, Boerno ST, Wunderlich A, Barmeyer C, Seemann P, Koenig J, Lappe M, Kuss AW, Garshasbi M, Bertram L, Trappe K, Werber M, Herrmann BG, Zatloukal K, Lehrach H, Schweiger MR.

PLoS One. 2010 Dec 22;5(12):e15661. doi: 10.1371/journal.pone.0015661.

6.

Clinical application of amplicon-based next-generation sequencing in cancer.

Chang F, Li MM.

Cancer Genet. 2013 Dec;206(12):413-9. doi: 10.1016/j.cancergen.2013.10.003. Epub 2013 Oct 11. Review.

PMID:
24332266
7.

Advances in understanding cancer genomes through second-generation sequencing.

Meyerson M, Gabriel S, Getz G.

Nat Rev Genet. 2010 Oct;11(10):685-96. doi: 10.1038/nrg2841. Review.

PMID:
20847746
8.

INDELseek: detection of complex insertions and deletions from next-generation sequencing data.

Au CH, Leung AY, Kwong A, Chan TL, Ma ES.

BMC Genomics. 2017 Jan 5;18(1):16. doi: 10.1186/s12864-016-3449-9.

9.

Sequencing approaches in cancer treatment.

Sekar D, Thirugnanasambantham K, Hairul Islam VI, Saravanan S.

Cell Prolif. 2014 Oct;47(5):391-5. doi: 10.1111/cpr.12124. Epub 2014 Aug 7. Review.

PMID:
25131793
10.

Genomic sequencing in cancer.

Tuna M, Amos CI.

Cancer Lett. 2013 Nov 1;340(2):161-70. doi: 10.1016/j.canlet.2012.11.004. Epub 2012 Nov 23. Review.

11.

Integrated next-generation sequencing analysis of whole exome and 409 cancer-related genes.

Shimoda Y, Nagashima T, Urakami K, Tanabe T, Saito J, Naruoka A, Serizawa M, Mochizuki T, Ohshima K, Ohnami S, Ohnami S, Kusuhara M, Yamaguchi K.

Biomed Res. 2016;37(6):367-379. doi: 10.2220/biomedres.37.367.

12.

MixClone: a mixture model for inferring tumor subclonal populations.

Li Y, Xie X.

BMC Genomics. 2015;16 Suppl 2:S1. doi: 10.1186/1471-2164-16-S2-S1. Epub 2015 Jan 21.

13.

Insights into cancer biology through next-generation sequencing.

Nik-Zainal S.

Clin Med (Lond). 2014 Dec;14 Suppl 6:s71-7. doi: 10.7861/clinmedicine.14-6-s71.

PMID:
25468925
14.

Clinical Applications of Next-Generation Sequencing in Cancer Diagnosis.

Sabour L, Sabour M, Ghorbian S.

Pathol Oncol Res. 2017 Apr;23(2):225-234. doi: 10.1007/s12253-016-0124-z. Epub 2016 Oct 8. Review.

PMID:
27722982
15.

Insights into the next generation of cancer stem cell research.

Brown DV, Mantamadiotis T.

Front Biosci (Landmark Ed). 2014 Jun 1;19:1015-27. Review.

PMID:
24896333
16.

Development and clinical application of an integrative genomic approach to personalized cancer therapy.

Uzilov AV, Ding W, Fink MY, Antipin Y, Brohl AS, Davis C, Lau CY, Pandya C, Shah H, Kasai Y, Powell J, Micchelli M, Castellanos R, Zhang Z, Linderman M, Kinoshita Y, Zweig M, Raustad K, Cheung K, Castillo D, Wooten M, Bourzgui I, Newman LC, Deikus G, Mathew B, Zhu J, Glicksberg BS, Moe AS, Liao J, Edelmann L, Dudley JT, Maki RG, Kasarskis A, Holcombe RF, Mahajan M, Hao K, Reva B, Longtine J, Starcevic D, Sebra R, Donovan MJ, Li S, Schadt EE, Chen R.

Genome Med. 2016 Jun 1;8(1):62. doi: 10.1186/s13073-016-0313-0.

17.

Computational analysis in cancer exome sequencing.

Evans P, Kong Y, Krauthammer M.

Methods Mol Biol. 2014;1176:219-27. doi: 10.1007/978-1-4939-0992-6_18.

PMID:
25030931
18.

Whole cancer genome sequencing by next-generation methods.

Ross JS, Cronin M.

Am J Clin Pathol. 2011 Oct;136(4):527-39. doi: 10.1309/AJCPR1SVT1VHUGXW. Review.

PMID:
21917674
19.

Understanding genomic alterations in cancer genomes using an integrative network approach.

Wang E.

Cancer Lett. 2013 Nov 1;340(2):261-9. doi: 10.1016/j.canlet.2012.11.050. Epub 2012 Dec 22. Review.

PMID:
23266571
20.

Comparative analysis of methods for identifying somatic copy number alterations from deep sequencing data.

Alkodsi A, Louhimo R, Hautaniemi S.

Brief Bioinform. 2015 Mar;16(2):242-54. doi: 10.1093/bib/bbu004. Epub 2014 Mar 5.

PMID:
24599115

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