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Items: 1 to 20 of 114

1.

A pause sequence enriched at translation start sites drives transcription dynamics in vivo.

Larson MH, Mooney RA, Peters JM, Windgassen T, Nayak D, Gross CA, Block SM, Greenleaf WJ, Landick R, Weissman JS.

Science. 2014 May 30;344(6187):1042-7. doi: 10.1126/science.1251871. Epub 2014 May 1.

2.

Molecular biology. Molecular basis of transcription pausing.

Roberts JW.

Science. 2014 Jun 13;344(6189):1226-7. doi: 10.1126/science.1255712. No abstract available.

PMID:
24926002
3.

Interactions between RNA polymerase and the "core recognition element" counteract pausing.

Vvedenskaya IO, Vahedian-Movahed H, Bird JG, Knoblauch JG, Goldman SR, Zhang Y, Ebright RH, Nickels BE.

Science. 2014 Jun 13;344(6189):1285-9. doi: 10.1126/science.1253458.

5.

Transcription pausing by Escherichia coli RNA polymerase is modulated by downstream DNA sequences.

Lee DN, Phung L, Stewart J, Landick R.

J Biol Chem. 1990 Sep 5;265(25):15145-53.

6.

Function of the Bacillus subtilis transcription elongation factor NusG in hairpin-dependent RNA polymerase pausing in the trp leader.

Yakhnin AV, Yakhnin H, Babitzke P.

Proc Natl Acad Sci U S A. 2008 Oct 21;105(42):16131-6. doi: 10.1073/pnas.0808842105. Epub 2008 Oct 13.

7.

Antisense oligonucleotide-stimulated transcriptional pausing reveals RNA exit channel specificity of RNA polymerase and mechanistic contributions of NusA and RfaH.

Kolb KE, Hein PP, Landick R.

J Biol Chem. 2014 Jan 10;289(2):1151-63. doi: 10.1074/jbc.M113.521393. Epub 2013 Nov 25.

8.

Mechanism of sequence-specific pausing of bacterial RNA polymerase.

Kireeva ML, Kashlev M.

Proc Natl Acad Sci U S A. 2009 Jun 2;106(22):8900-5. doi: 10.1073/pnas.0900407106. Epub 2009 Apr 24.

9.

Identification of an AU-rich translational enhancer within the Escherichia coli fepB leader RNA.

Hook-Barnard IG, Brickman TJ, McIntosh MA.

J Bacteriol. 2007 Jun;189(11):4028-37. Epub 2007 Mar 30.

10.

Sequence-resolved detection of pausing by single RNA polymerase molecules.

Herbert KM, La Porta A, Wong BJ, Mooney RA, Neuman KC, Landick R, Block SM.

Cell. 2006 Jun 16;125(6):1083-94.

11.
12.

Pausing by bacterial RNA polymerase is mediated by mechanistically distinct classes of signals.

Artsimovitch I, Landick R.

Proc Natl Acad Sci U S A. 2000 Jun 20;97(13):7090-5.

13.

Stochastic sequence-level model of coupled transcription and translation in prokaryotes.

Mäkelä J, Lloyd-Price J, Yli-Harja O, Ribeiro AS.

BMC Bioinformatics. 2011 Apr 26;12:121. doi: 10.1186/1471-2105-12-121.

14.

Epsilon as an initiator of translation of CAT mRNA in Escherichia coli.

Golshani A, Kolev V, AbouHaidar MG, Ivanov IG.

Biochem Biophys Res Commun. 2000 Jul 5;273(2):528-31.

PMID:
10873639
15.

Sites of initiation and pausing in the Escherichia coli rnpB (M1 RNA) transcript.

Lee Y, Ramamoorthy R, Park CU, Schmidt FJ.

J Biol Chem. 1989 Mar 25;264(9):5098-103.

16.

RNA Polymerase Pausing during Initial Transcription.

Duchi D, Bauer DL, Fernandez L, Evans G, Robb N, Hwang LC, Gryte K, Tomescu A, Zawadzki P, Morichaud Z, Brodolin K, Kapanidis AN.

Mol Cell. 2016 Sep 15;63(6):939-50. doi: 10.1016/j.molcel.2016.08.011. Epub 2016 Sep 8.

17.

Kinetics of RNA polymerase initiation and pausing at the lambda late gene promoter in vivo.

Kainz M, Roberts JW.

J Mol Biol. 1995 Dec 15;254(5):808-14.

PMID:
7500352
18.

Visualizing translocation dynamics and nascent transcript errors in paused RNA polymerases in vivo.

Imashimizu M, Takahashi H, Oshima T, McIntosh C, Bubunenko M, Court DL, Kashlev M.

Genome Biol. 2015 May 15;16:98. doi: 10.1186/s13059-015-0666-5. Erratum in: Genome Biol. 2015;16:270.

19.

Σ(70)-dependent transcription pausing in Escherichia coli.

Perdue SA, Roberts JW.

J Mol Biol. 2011 Oct 7;412(5):782-92. doi: 10.1016/j.jmb.2011.02.011. Epub 2011 Feb 18.

PMID:
21316374
20.

A backtrack-inducing sequence is an essential component of Escherichia coli σ(70)-dependent promoter-proximal pausing.

Perdue SA, Roberts JW.

Mol Microbiol. 2010 Nov;78(3):636-50. doi: 10.1111/j.1365-2958.2010.07347.x. Epub 2010 Sep 30.

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