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Items: 1 to 20 of 78

1.

Siri of the cell: what biology could learn from the iPhone.

Carvunis AR, Ideker T.

Cell. 2014 Apr 24;157(3):534-8. doi: 10.1016/j.cell.2014.03.009.

2.

The influence of similarity between concepts in evolving biomedical ontologies for mapping adaptation.

Dos Reis JC, Dinh D, Pruski C, Da Silveira M, Reynaud-Delaître C.

Stud Health Technol Inform. 2014;205:1003-7.

PMID:
25160339
3.

Networks for systems biology: conceptual connection of data and function.

Emmert-Streib F, Dehmer M.

IET Syst Biol. 2011 May;5(3):185-207. doi: 10.1049/iet-syb.2010.0025. Review.

PMID:
21639592
4.

Recognizing lexical and semantic change patterns in evolving life science ontologies to inform mapping adaptation.

Dos Reis JC, Dinh D, Da Silveira M, Pruski C, Reynaud-Delaître C.

Artif Intell Med. 2015 Mar;63(3):153-70. doi: 10.1016/j.artmed.2014.11.002. Epub 2014 Dec 6.

PMID:
25530449
5.

The use of concept maps during knowledge elicitation in ontology development processes--the nutrigenomics use case.

Castro AG, Rocca-Serra P, Stevens R, Taylor C, Nashar K, Ragan MA, Sansone SA.

BMC Bioinformatics. 2006 May 25;7:267.

6.

Ontology patterns-based transformation of clinical information.

Legaz-García Mdel C, Martínez-Costa C, Miñarro-Giménez JA, Fernández-Breis JT, Schulz S, Menárguez-Tortosa M.

Stud Health Technol Inform. 2014;205:1018-22.

PMID:
25160342
7.

Extraction of biological interaction networks from scientific literature.

Skusa A, Rüegg A, Köhler J.

Brief Bioinform. 2005 Sep;6(3):263-76. Review.

PMID:
16212774
8.

Bio-ontologies: current trends and future directions.

Bodenreider O, Stevens R.

Brief Bioinform. 2006 Sep;7(3):256-74. Epub 2006 Aug 9. Review.

9.

A knowledge model for analysis and simulation of regulatory networks.

Rzhetsky A, Koike T, Kalachikov S, Gomez SM, Krauthammer M, Kaplan SH, Kra P, Russo JJ, Friedman C.

Bioinformatics. 2000 Dec;16(12):1120-8.

PMID:
11159331
10.

Structure learning for Bayesian networks as models of biological networks.

Larjo A, Shmulevich I, Lähdesmäki H.

Methods Mol Biol. 2013;939:35-45. doi: 10.1007/978-1-62703-107-3_4.

PMID:
23192539
11.

Text mining and its potential applications in systems biology.

Ananiadou S, Kell DB, Tsujii J.

Trends Biotechnol. 2006 Dec;24(12):571-9. Epub 2006 Oct 12. Review.

PMID:
17045684
12.

Anatomical reasoning in the informatics age: Principles, ontologies, and agendas.

Trelease RB.

Anat Rec B New Anat. 2006 Mar;289(2):72-84. Review.

13.

Cancer systems biology: exploring cancer-associated genes on cellular networks.

Wang E, Lenferink A, O'Connor-McCourt M.

Cell Mol Life Sci. 2007 Jul;64(14):1752-62. Review.

PMID:
17415519
14.

Reverse-engineering human regulatory networks.

Lefebvre C, Rieckhof G, Califano A.

Wiley Interdiscip Rev Syst Biol Med. 2012 Jul-Aug;4(4):311-25. doi: 10.1002/wsbm.1159. Epub 2012 Jan 13. Review.

15.

Hierarchical coordinate systems for understanding complexity and its evolution, with applications to genetic regulatory networks.

Egri-Nagy A, Nehaniv CL.

Artif Life. 2008 Summer;14(3):299-312. doi: 10.1162/artl.2008.14.3.14305.

PMID:
18489252
16.

Special section on machine intelligence approaches to systems biology.

Fogel GB, Bullinger E, Su SF, Azuaje F.

IEEE Trans Syst Man Cybern B Cybern. 2008 Feb;38(1):2-4. doi: 10.1109/TSMCB.2007.910577.

PMID:
18270077
17.

Artificial intelligence in biomedical engineering and informatics: an introduction and review.

Peng Y, Zhang Y, Wang L.

Artif Intell Med. 2010 Feb-Mar;48(2-3):71-3. doi: 10.1016/j.artmed.2009.07.007. Epub 2009 Dec 31. No abstract available.

PMID:
20045299
18.

Use of genome-scale metabolic models in evolutionary systems biology.

Papp B, Szappanos B, Notebaart RA.

Methods Mol Biol. 2011;759:483-97. doi: 10.1007/978-1-61779-173-4_27. Review.

PMID:
21863504
19.

Systems Biology Graphical Notation: Process Description language Level 1 Version 1.3.

Moodie S, Le Novère N, Demir E, Mi H, Villéger A.

J Integr Bioinform. 2015 Sep 4;12(2):263. doi: 10.2390/biecoll-jib-2015-263.

PMID:
26528561
20.

Gene regulatory networks in the Arabidopsis root.

De Lucas M, Brady SM.

Curr Opin Plant Biol. 2013 Feb;16(1):50-5. doi: 10.1016/j.pbi.2012.10.007. Epub 2012 Nov 26. Review.

PMID:
23196272

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