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Items: 1 to 20 of 137

1.

Identification of functional modules by integration of multiple data sources using a Bayesian network classifier.

Wang J, Zuo Y, Liu L, Man Y, Tadesse MG, Ressom HW.

Circ Cardiovasc Genet. 2014 Apr;7(2):206-17. doi: 10.1161/CIRCGENETICS.113.000087.

2.

Dynamic protein interaction modules in human hepatocellular carcinoma progression.

Yu H, Lin CC, Li YY, Zhao Z.

BMC Syst Biol. 2013;7 Suppl 5:S2. doi: 10.1186/1752-0509-7-S5-S2. Epub 2013 Dec 9.

3.

Analysis of hepatocellular carcinoma and metastatic hepatic carcinoma via functional modules in a protein-protein interaction network.

Pan J, Cong Z, Zhong M, Sun Y.

J Cancer Res Ther. 2014 Nov;10 Suppl:C186-94. doi: 10.4103/0973-1482.145866.

4.

RMaNI: Regulatory Module Network Inference framework.

Madhamshettiwar PB, Maetschke SR, Davis MJ, Ragan MA.

BMC Bioinformatics. 2013;14 Suppl 16:S14. doi: 10.1186/1471-2105-14-S16-S14. Epub 2013 Oct 22.

5.

Network stratification analysis for identifying function-specific network layers.

Zhang C, Wang J, Zhang C, Liu J, Xu D, Chen L.

Mol Biosyst. 2016 Apr;12(4):1232-40. doi: 10.1039/c5mb00782h. Epub 2016 Feb 16.

PMID:
26879865
6.

Integrating Bayesian variable selection with Modular Response Analysis to infer biochemical network topology.

Santra T, Kolch W, Kholodenko BN.

BMC Syst Biol. 2013 Jul 6;7:57. doi: 10.1186/1752-0509-7-57.

7.

Improving protein complex prediction by reconstructing a high-confidence protein-protein interaction network of Escherichia coli from different physical interaction data sources.

Taghipour S, Zarrineh P, Ganjtabesh M, Nowzari-Dalini A.

BMC Bioinformatics. 2017 Jan 3;18(1):10. doi: 10.1186/s12859-016-1422-x.

8.

Identification of hepatocellular carcinoma related genes with k-th shortest paths in a protein-protein interaction network.

Jiang M, Chen Y, Zhang Y, Chen L, Zhang N, Huang T, Cai YD, Kong X.

Mol Biosyst. 2013 Nov;9(11):2720-8. doi: 10.1039/c3mb70089e.

PMID:
24056857
9.

Reverse engineering module networks by PSO-RNN hybrid modeling.

Zhang Y, Xuan J, de los Reyes BG, Clarke R, Ressom HW.

BMC Genomics. 2009 Jul 7;10 Suppl 1:S15. doi: 10.1186/1471-2164-10-S1-S15.

10.

Integrated analyses to reconstruct microRNA-mediated regulatory networks in mouse liver using high-throughput profiling.

Hsu SD, Huang HY, Chou CH, Sun YM, Hsu MT, Tsou AP.

BMC Genomics. 2015;16 Suppl 2:S12. doi: 10.1186/1471-2164-16-S2-S12. Epub 2015 Jan 21.

11.

Exploring complex miRNA-mRNA interactions with Bayesian networks by splitting-averaging strategy.

Liu B, Li J, Tsykin A, Liu L, Gaur AB, Goodall GJ.

BMC Bioinformatics. 2009 Dec 10;10:408. doi: 10.1186/1471-2105-10-408.

12.

A genomewide functional network for the laboratory mouse.

Guan Y, Myers CL, Lu R, Lemischka IR, Bult CJ, Troyanskaya OG.

PLoS Comput Biol. 2008 Sep 26;4(9):e1000165. doi: 10.1371/journal.pcbi.1000165.

13.

Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data.

Zhang Y, Xuan J, de los Reyes BG, Clarke R, Ressom HW.

BMC Bioinformatics. 2008 Apr 21;9:203. doi: 10.1186/1471-2105-9-203.

14.

LiverAtlas: a unique integrated knowledge database for systems-level research of liver and hepatic disease.

Zhang Y, Yang C, Wang S, Chen T, Li M, Wang X, Li D, Wang K, Ma J, Wu S, Zhang X, Zhu Y, Wu J, He F.

Liver Int. 2013 Sep;33(8):1239-48. doi: 10.1111/liv.12173. Epub 2013 Apr 21.

PMID:
23601370
15.

Reconstruction of gene regulatory modules in cancer cell cycle by multi-source data integration.

Zhang Y, Xuan J, de los Reyes BG, Clarke R, Ressom HW.

PLoS One. 2010 Apr 21;5(4):e10268. doi: 10.1371/journal.pone.0010268.

16.

A framework of integrating gene relations from heterogeneous data sources: an experiment on Arabidopsis thaliana.

Li J, Li X, Su H, Chen H, Galbraith DW.

Bioinformatics. 2006 Aug 15;22(16):2037-43. Epub 2006 Jul 4.

PMID:
16820427
17.

Identification of functional hubs and modules by converting interactome networks into hierarchical ordering of proteins.

Cho YR, Zhang A.

BMC Bioinformatics. 2010 Apr 29;11 Suppl 3:S3. doi: 10.1186/1471-2105-11-S3-S3.

18.

Functional and topological properties in hepatocellular carcinoma transcriptome.

Drozdov I, Bornschein J, Wex T, Valeyev NV, Tsoka S, Malfertheiner P.

PLoS One. 2012;7(4):e35510. doi: 10.1371/journal.pone.0035510. Epub 2012 Apr 23.

19.
20.

Comparative analysis of viral protein interaction networks in Hepatitis B virus and Hepatitis C virus infected HCC.

Yuan W, Huang T, Yu J, Zeng L, Lian B, He Q, Li Y, Zhang X, Zhou F, Xie L.

Biochim Biophys Acta. 2014 Jan;1844(1 Pt B):271-9. doi: 10.1016/j.bbapap.2013.06.002. Epub 2013 Jun 14.

PMID:
23774196

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