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Extensive and coordinated control of allele-specific expression by both transcription and translation in Candida albicans.

Muzzey D, Sherlock G, Weissman JS.

Genome Res. 2014 Jun;24(6):963-73. doi: 10.1101/gr.166322.113. Epub 2014 Apr 14.


Extensive variation between tissues in allele specific expression in an outbred mammal.

Chamberlain AJ, Vander Jagt CJ, Hayes BJ, Khansefid M, Marett LC, Millen CA, Nguyen TT, Goddard ME.

BMC Genomics. 2015 Nov 23;16:993. doi: 10.1186/s12864-015-2174-0.


Analysis of Repair Mechanisms following an Induced Double-Strand Break Uncovers Recessive Deleterious Alleles in the Candida albicans Diploid Genome.

Feri A, Loll-Krippleber R, Commere PH, Maufrais C, Sertour N, Schwartz K, Sherlock G, Bougnoux ME, d'Enfert C, Legrand M.

MBio. 2016 Oct 11;7(5). pii: e01109-16. doi: 10.1128/mBio.01109-16.


Genetic influences on translation in yeast.

Albert FW, Muzzey D, Weissman JS, Kruglyak L.

PLoS Genet. 2014 Oct 23;10(10):e1004692. doi: 10.1371/journal.pgen.1004692. eCollection 2014 Oct.


Novel method for analysis of allele specific expression in triploid Oryzias latipes reveals consistent pattern of allele exclusion.

Garcia TI, Matos I, Shen Y, Pabuwal V, Coelho MM, Wakamatsu Y, Schartl M, Walter RB.

PLoS One. 2014 Jun 19;9(6):e100250. doi: 10.1371/journal.pone.0100250. eCollection 2014.


Heterozygosity and functional allelic variation in the Candida albicans efflux pump genes CDR1 and CDR2.

Holmes AR, Tsao S, Ong SW, Lamping E, Niimi K, Monk BC, Niimi M, Kaneko A, Holland BR, Schmid J, Cannon RD.

Mol Microbiol. 2006 Oct;62(1):170-86. Epub 2006 Aug 30.


Powerful identification of cis-regulatory SNPs in human primary monocytes using allele-specific gene expression.

Almlöf JC, Lundmark P, Lundmark A, Ge B, Maouche S, Göring HH, Liljedahl U, Enström C, Brocheton J, Proust C, Godefroy T, Sambrook JG, Jolley J, Crisp-Hihn A, Foad N, Lloyd-Jones H, Stephens J, Gwilliam R, Rice CM, Hengstenberg C, Samani NJ, Erdmann J, Schunkert H, Pastinen T, Deloukas P, Goodall AH, Ouwehand WH, Cambien F, Syvänen AC.

PLoS One. 2012;7(12):e52260. doi: 10.1371/journal.pone.0052260. Epub 2012 Dec 26.


Host versus in vitro signals and intrastrain allelic differences in the expression of a Candida albicans virulence gene.

Staib P, Kretschmar M, Nichterlein T, Hof H, Morschhäuser J.

Mol Microbiol. 2002 Jun;44(5):1351-66.


Genome-wide screening for cis-regulatory variation using a classical diallel crossing scheme.

Kiekens R, Vercauteren A, Moerkerke B, Goetghebeur E, Van Den Daele H, Sterken R, Kuiper M, van Eeuwijk F, Vuylsteke M.

Nucleic Acids Res. 2006 Aug 2;34(13):3677-86. Print 2006. Erratum in: Nucleic Acids Res. 2007;35(3):1038.


Species and condition specific adaptation of the transcriptional landscapes in Candida albicans and Candida dubliniensis.

Grumaz C, Lorenz S, Stevens P, Lindemann E, Schöck U, Retey J, Rupp S, Sohn K.

BMC Genomics. 2013 Apr 2;14:212. doi: 10.1186/1471-2164-14-212.


AlleleSeq: analysis of allele-specific expression and binding in a network framework.

Rozowsky J, Abyzov A, Wang J, Alves P, Raha D, Harmanci A, Leng J, Bjornson R, Kong Y, Kitabayashi N, Bhardwaj N, Rubin M, Snyder M, Gerstein M.

Mol Syst Biol. 2011 Aug 2;7:522. doi: 10.1038/msb.2011.54.


Tetracycline-inducible gene expression and gene deletion in Candida albicans.

Park YN, Morschhäuser J.

Eukaryot Cell. 2005 Aug;4(8):1328-42.


Promoter heterozygosity at the Candida albicans CHS7 gene is translated into differential expression between alleles.

Sanz M, Valle R, Roncero C.

FEMS Yeast Res. 2007 Sep;7(6):993-1003. Epub 2007 Jun 7.


Quantitative measurement of allele-specific protein expression in a diploid yeast hybrid by LC-MS.

Khan Z, Bloom JS, Amini S, Singh M, Perlman DH, Caudy AA, Kruglyak L.

Mol Syst Biol. 2012;8:602. doi: 10.1038/msb.2012.34.


Allele-specific expression assays using Solexa.

Main BJ, Bickel RD, McIntyre LM, Graze RM, Calabrese PP, Nuzhdin SV.

BMC Genomics. 2009 Sep 9;10:422. doi: 10.1186/1471-2164-10-422.


Genome-wide allele- and strand-specific expression profiling.

Gagneur J, Sinha H, Perocchi F, Bourgon R, Huber W, Steinmetz LM.

Mol Syst Biol. 2009;5:274. doi: 10.1038/msb.2009.31. Epub 2009 Jun 16.


Recommendations for Accurate Resolution of Gene and Isoform Allele-Specific Expression in RNA-Seq Data.

Wood DL, Nones K, Steptoe A, Christ A, Harliwong I, Newell F, Bruxner TJ, Miller D, Cloonan N, Grimmond SM.

PLoS One. 2015 May 12;10(5):e0126911. doi: 10.1371/journal.pone.0126911. eCollection 2015.


Allelic variation in the contiguous loci encoding Candida albicans ALS5, ALS1 and ALS9.

Zhao X, Pujol C, Soll DR, Hoyer LL.

Microbiology. 2003 Oct;149(Pt 10):2947-60.


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