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Items: 1 to 20 of 85

1.

Inferring the evolutionary history of primate microRNA binding sites: overcoming motif counting biases.

Simkin AT, Bailey JA, Gao FB, Jensen JD.

Mol Biol Evol. 2014 Jul;31(7):1894-901. doi: 10.1093/molbev/msu129. Epub 2014 Apr 9.

2.

Natural selection on human microRNA binding sites inferred from SNP data.

Chen K, Rajewsky N.

Nat Genet. 2006 Dec;38(12):1452-6. Epub 2006 Oct 29.

PMID:
17072316
3.

Ancestral sequence reconstruction in primate mitochondrial DNA: compositional bias and effect on functional inference.

Krishnan NM, Seligmann H, Stewart CB, De Koning AP, Pollock DD.

Mol Biol Evol. 2004 Oct;21(10):1871-83. Epub 2004 Jun 30.

PMID:
15229290
4.

Most mammalian mRNAs are conserved targets of microRNAs.

Friedman RC, Farh KK, Burge CB, Bartel DP.

Genome Res. 2009 Jan;19(1):92-105. doi: 10.1101/gr.082701.108. Epub 2008 Oct 27.

5.

The relationship between the evolution of microRNA targets and the length of their UTRs.

Cheng C, Bhardwaj N, Gerstein M.

BMC Genomics. 2009 Sep 14;10:431. doi: 10.1186/1471-2164-10-431.

6.

Molecular evolution of a primate-specific microRNA family.

Zhang R, Wang YQ, Su B.

Mol Biol Evol. 2008 Jul;25(7):1493-502. doi: 10.1093/molbev/msn094. Epub 2008 Apr 15.

PMID:
18417486
7.

CPEB2, CPEB3 and CPEB4 are coordinately regulated by miRNAs recognizing conserved binding sites in paralog positions of their 3'-UTRs.

Morgan M, Iaconcig A, Muro AF.

Nucleic Acids Res. 2010 Nov;38(21):7698-710. doi: 10.1093/nar/gkq635. Epub 2010 Jul 25.

8.

Computational prediction and experimental validation of evolutionarily conserved microRNA target genes in bilaterian animals.

Takane K, Fujishima K, Watanabe Y, Sato A, Saito N, Tomita M, Kanai A.

BMC Genomics. 2010 Feb 9;11:101. doi: 10.1186/1471-2164-11-101.

9.

Evolution of an X-linked primate-specific micro RNA cluster.

Li J, Liu Y, Dong D, Zhang Z.

Mol Biol Evol. 2010 Mar;27(3):671-83. doi: 10.1093/molbev/msp284. Epub 2009 Nov 19.

PMID:
19933172
10.

Evolution of microRNAs and the diversification of species.

Loh YH, Yi SV, Streelman JT.

Genome Biol Evol. 2011;3:55-65. doi: 10.1093/gbe/evq085. Epub 2010 Dec 15.

11.

An evolutionarily biased distribution of miRNA sites toward regulatory genes with high promoter-driven intrinsic transcriptional noise.

Zare H, Khodursky A, Sartorelli V.

BMC Evol Biol. 2014 Apr 4;14:74. doi: 10.1186/1471-2148-14-74.

12.

New class of microRNA targets containing simultaneous 5'-UTR and 3'-UTR interaction sites.

Lee I, Ajay SS, Yook JI, Kim HS, Hong SH, Kim NH, Dhanasekaran SM, Chinnaiyan AM, Athey BD.

Genome Res. 2009 Jul;19(7):1175-83. doi: 10.1101/gr.089367.108. Epub 2009 Mar 31.

14.

Primate-specific evolution of an LDLR enhancer.

Wang QF, Prabhakar S, Wang Q, Moses AM, Chanan S, Brown M, Eisen MB, Cheng JF, Rubin EM, Boffelli D.

Genome Biol. 2006;7(8):R68. Epub 2006 Aug 2.

15.

The evolution of evolvability in microRNA target sites in vertebrates.

Xu J, Zhang R, Shen Y, Liu G, Lu X, Wu CI.

Genome Res. 2013 Nov;23(11):1810-6. doi: 10.1101/gr.148916.112. Epub 2013 Sep 27.

16.

Functional evolution of cardiac microRNAs in heart development and functions.

Lin CC, Chang YM, Pan CT, Chen CC, Ling L, Tsao KC, Yang RB, Li WH.

Mol Biol Evol. 2014 Oct;31(10):2722-34. doi: 10.1093/molbev/msu217. Epub 2014 Jul 24.

PMID:
25063441
17.

Conservation and divergence of microRNAs in Populus.

Barakat A, Wall PK, Diloreto S, Depamphilis CW, Carlson JE.

BMC Genomics. 2007 Dec 31;8:481. doi: 10.1186/1471-2164-8-481.

18.

UTR dinucleotide simple sequence repeat evolution exhibits recurring patterns including regulatory sequence motif replacements.

Riley DE, Krieger JN.

Gene. 2009 Jan 15;429(1-2):80-6. doi: 10.1016/j.gene.2008.09.030. Epub 2008 Oct 10.

19.

miRNAs: small genes with big potential in metazoan phylogenetics.

Tarver JE, Sperling EA, Nailor A, Heimberg AM, Robinson JM, King BL, Pisani D, Donoghue PC, Peterson KJ.

Mol Biol Evol. 2013 Nov;30(11):2369-82. doi: 10.1093/molbev/mst133. Epub 2013 Aug 2. Review.

PMID:
23913097
20.

MicroRNA binding sites in C. elegans 3' UTRs.

Liu C, Rennie WA, Mallick B, Kanoria S, Long D, Wolenc A, Carmack CS, Ding Y.

RNA Biol. 2014;11(6):693-701. Epub 2014 Apr 25.

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