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Items: 1 to 20 of 120

1.

tagtog: interactive and text-mining-assisted annotation of gene mentions in PLOS full-text articles.

Cejuela JM, McQuilton P, Ponting L, Marygold SJ, Stefancsik R, Millburn GH, Rost B; FlyBase Consortium.

Database (Oxford). 2014 Apr 7;2014(0):bau033. doi: 10.1093/database/bau033. Print 2014.

2.

Opportunities for text mining in the FlyBase genetic literature curation workflow.

McQuilton P; FlyBase Consortium.

Database (Oxford). 2012 Nov 17;2012:bas039. doi: 10.1093/database/bas039. Print 2012.

3.

BC4GO: a full-text corpus for the BioCreative IV GO task.

Van Auken K, Schaeffer ML, McQuilton P, Laulederkind SJ, Li D, Wang SJ, Hayman GT, Tweedie S, Arighi CN, Done J, Müller HM, Sternberg PW, Mao Y, Wei CH, Lu Z.

Database (Oxford). 2014 Jul 28;2014. pii: bau074. doi: 10.1093/database/bau074. Print 2014.

4.

Overview of the gene ontology task at BioCreative IV.

Mao Y, Van Auken K, Li D, Arighi CN, McQuilton P, Hayman GT, Tweedie S, Schaeffer ML, Laulederkind SJ, Wang SJ, Gobeill J, Ruch P, Luu AT, Kim JJ, Chiang JH, Chen YD, Yang CJ, Liu H, Zhu D, Li Y, Yu H, Emadzadeh E, Gonzalez G, Chen JM, Dai HJ, Lu Z.

Database (Oxford). 2014 Aug 25;2014. pii: bau086. doi: 10.1093/database/bau086. Print 2014.

5.

Egas: a collaborative and interactive document curation platform.

Campos D, Lourenço J, Matos S, Oliveira JL.

Database (Oxford). 2014 Jun 11;2014. pii: bau048. doi: 10.1093/database/bau048. Print 2014.

6.

EXTRACT: interactive extraction of environment metadata and term suggestion for metagenomic sample annotation.

Pafilis E, Buttigieg PL, Ferrell B, Pereira E, Schnetzer J, Arvanitidis C, Jensen LJ.

Database (Oxford). 2016 Feb 20;2016. pii: baw005. doi: 10.1093/database/baw005. Print 2016.

7.

BioCreative III interactive task: an overview.

Arighi CN, Roberts PM, Agarwal S, Bhattacharya S, Cesareni G, Chatr-Aryamontri A, Clematide S, Gaudet P, Giglio MG, Harrow I, Huala E, Krallinger M, Leser U, Li D, Liu F, Lu Z, Maltais LJ, Okazaki N, Perfetto L, Rinaldi F, Sætre R, Salgado D, Srinivasan P, Thomas PE, Toldo L, Hirschman L, Wu CH.

BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S4. doi: 10.1186/1471-2105-12-S8-S4.

8.

Assisting manual literature curation for protein-protein interactions using BioQRator.

Kwon D, Kim S, Shin SY, Chatr-aryamontri A, Wilbur WJ.

Database (Oxford). 2014 Jul 22;2014. pii: bau067. doi: 10.1093/database/bau067. Print 2014.

9.

Argo: an integrative, interactive, text mining-based workbench supporting curation.

Rak R, Rowley A, Black W, Ananiadou S.

Database (Oxford). 2012 Mar 20;2012:bas010. doi: 10.1093/database/bas010. Print 2012.

10.

Argo: enabling the development of bespoke workflows and services for disease annotation.

Batista-Navarro R, Carter J, Ananiadou S.

Database (Oxford). 2016 May 17;2016. pii: baw066. doi: 10.1093/database/baw066. Print 2016.

11.

RLIMS-P: an online text-mining tool for literature-based extraction of protein phosphorylation information.

Torii M, Li G, Li Z, Oughtred R, Diella F, Celen I, Arighi CN, Huang H, Vijay-Shanker K, Wu CH.

Database (Oxford). 2014 Aug 13;2014. pii: bau081. doi: 10.1093/database/bau081. Print 2014.

12.

An overview of the BioCreative 2012 Workshop Track III: interactive text mining task.

Arighi CN, Carterette B, Cohen KB, Krallinger M, Wilbur WJ, Fey P, Dodson R, Cooper L, Van Slyke CE, Dahdul W, Mabee P, Li D, Harris B, Gillespie M, Jimenez S, Roberts P, Matthews L, Becker K, Drabkin H, Bello S, Licata L, Chatr-aryamontri A, Schaeffer ML, Park J, Haendel M, Van Auken K, Li Y, Chan J, Muller HM, Cui H, Balhoff JP, Chi-Yang Wu J, Lu Z, Wei CH, Tudor CO, Raja K, Subramani S, Natarajan J, Cejuela JM, Dubey P, Wu C.

Database (Oxford). 2013 Jan 17;2013:bas056. doi: 10.1093/database/bas056. Print 2013.

13.

Accelerating literature curation with text-mining tools: a case study of using PubTator to curate genes in PubMed abstracts.

Wei CH, Harris BR, Li D, Berardini TZ, Huala E, Kao HY, Lu Z.

Database (Oxford). 2012 Nov 17;2012:bas041. doi: 10.1093/database/bas041. Print 2012.

14.

Text-mining-assisted biocuration workflows in Argo.

Rak R, Batista-Navarro RT, Rowley A, Carter J, Ananiadou S.

Database (Oxford). 2014 Jul 18;2014. pii: bau070. doi: 10.1093/database/bau070. Print 2014.

15.

Building an efficient curation workflow for the Arabidopsis literature corpus.

Li D, Berardini TZ, Muller RJ, Huala E.

Database (Oxford). 2012 Dec 6;2012:bas047. doi: 10.1093/database/bas047. Print 2012.

16.

How to link ontologies and protein-protein interactions to literature: text-mining approaches and the BioCreative experience.

Krallinger M, Leitner F, Vazquez M, Salgado D, Marcelle C, Tyers M, Valencia A, Chatr-aryamontri A.

Database (Oxford). 2012 Mar 21;2012:bas017. doi: 10.1093/database/bas017. Print 2012.

17.

An evaluation of GO annotation retrieval for BioCreAtIvE and GOA.

Camon EB, Barrell DG, Dimmer EC, Lee V, Magrane M, Maslen J, Binns D, Apweiler R.

BMC Bioinformatics. 2005;6 Suppl 1:S17. Epub 2005 May 24.

18.

BioCreative V CDR task corpus: a resource for chemical disease relation extraction.

Li J, Sun Y, Johnson RJ, Sciaky D, Wei CH, Leaman R, Davis AP, Mattingly CJ, Wiegers TC, Lu Z.

Database (Oxford). 2016 May 9;2016. pii: baw068. doi: 10.1093/database/baw068. Print 2016.

19.

The BioC-BioGRID corpus: full text articles annotated for curation of protein-protein and genetic interactions.

Islamaj Dogan R, Kim S, Chatr-Aryamontri A, Chang CS, Oughtred R, Rust J, Wilbur WJ, Comeau DC, Dolinski K, Tyers M.

Database (Oxford). 2017 Jan 10;2017. doi: 10.1093/database/baw147. Print 2017.

20.

MINT and IntAct contribute to the Second BioCreative challenge: serving the text-mining community with high quality molecular interaction data.

Chatr-aryamontri A, Kerrien S, Khadake J, Orchard S, Ceol A, Licata L, Castagnoli L, Costa S, Derow C, Huntley R, Aranda B, Leroy C, Thorneycroft D, Apweiler R, Cesareni G, Hermjakob H.

Genome Biol. 2008;9 Suppl 2:S5. doi: 10.1186/gb-2008-9-s2-s5. Epub 2008 Sep 1.

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