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Items: 1 to 20 of 162

1.

Stochastic multiple-valued gene networks.

Zhu P, Han J.

IEEE Trans Biomed Circuits Syst. 2014 Feb;8(1):42-53. doi: 10.1109/TBCAS.2013.2291398.

PMID:
24681918
2.

Stochastic Boolean networks: an efficient approach to modeling gene regulatory networks.

Liang J, Han J.

BMC Syst Biol. 2012 Aug 28;6:113. doi: 10.1186/1752-0509-6-113.

3.

Gene perturbation and intervention in context-sensitive stochastic Boolean networks.

Zhu P, Liang J, Han J.

BMC Syst Biol. 2014 May 21;8:60. doi: 10.1186/1752-0509-8-60.

4.

Asynchronous stochastic Boolean networks as gene network models.

Zhu P, Han J.

J Comput Biol. 2014 Oct;21(10):771-83. doi: 10.1089/cmb.2014.0057. Epub 2014 Jun 17.

PMID:
24937230
5.

Intervention in context-sensitive probabilistic Boolean networks.

Pal R, Datta A, Bittner ML, Dougherty ER.

Bioinformatics. 2005 Apr 1;21(7):1211-8. Epub 2004 Nov 5.

PMID:
15531600
6.

The complex fluctuations of probabilistic Boolean networks.

Gao YM, Xu P, Wang XH, Liu WB.

Biosystems. 2013 Oct;114(1):78-84. doi: 10.1016/j.biosystems.2013.07.008. Epub 2013 Jul 16.

PMID:
23871965
7.

An approximation method for solving the steady-state probability distribution of probabilistic Boolean networks.

Ching WK, Zhang S, Ng MK, Akutsu T.

Bioinformatics. 2007 Jun 15;23(12):1511-8. Epub 2007 Apr 26.

PMID:
17463027
8.

Distribution and enumeration of attractors in probabilistic Boolean networks.

Hayashida M, Tamura T, Akutsu T, Ching WK, Cong Y.

IET Syst Biol. 2009 Nov;3(6):465-74. doi: 10.1049/iet-syb.2008.0177.

PMID:
19947772
9.

Verification and optimal control of context-sensitive probabilistic Boolean networks using model checking and polynomial optimization.

Kobayashi K, Hiraishi K.

ScientificWorldJournal. 2014 Jan 23;2014:968341. doi: 10.1155/2014/968341. eCollection 2014.

10.

Gene perturbation and intervention in probabilistic Boolean networks.

Shmulevich I, Dougherty ER, Zhang W.

Bioinformatics. 2002 Oct;18(10):1319-31.

PMID:
12376376
11.

Simulation study in Probabilistic Boolean Network models for genetic regulatory networks.

Zhang SQ, Ching WK, Ng MK, Akutsu T.

Int J Data Min Bioinform. 2007;1(3):217-40.

PMID:
18399072
12.

On optimal control policy for probabilistic Boolean network: a state reduction approach.

Chen X, Jiang H, Qiu Y, Ching WK.

BMC Syst Biol. 2012;6 Suppl 1:S8. doi: 10.1186/1752-0509-6-S1-S8. Epub 2012 Jul 16.

13.

Generating probabilistic Boolean networks from a prescribed transition probability matrix.

Ching WK, Chen X, Tsing NK.

IET Syst Biol. 2009 Nov;3(6):453-64. doi: 10.1049/iet-syb.2008.0173.

PMID:
19947771
14.

Intervention in a family of Boolean networks.

Choudhary A, Datta A, Bittner ML, Dougherty ER.

Bioinformatics. 2006 Jan 15;22(2):226-32. Epub 2005 Nov 12.

PMID:
16286362
15.

Diversity of temporal correlations between genes in models of noisy and noiseless gene networks.

Ribeiro AS, Lloyd-Price J, Chowdhury S, Yli-Harja O.

Biosystems. 2011 May-Jun;104(2-3):136-44. doi: 10.1016/j.biosystems.2011.02.003. Epub 2011 Feb 26.

PMID:
21356270
16.
17.

Inference of Gene Regulatory Network Based on Local Bayesian Networks.

Liu F, Zhang SW, Guo WF, Wei ZG, Chen L.

PLoS Comput Biol. 2016 Aug 1;12(8):e1005024. doi: 10.1371/journal.pcbi.1005024. eCollection 2016 Aug.

18.

Probabilistic reconstruction of the tumor progression process in gene regulatory networks in the presence of uncertainty.

Esfahani MS, Yoon BJ, Dougherty ER.

BMC Bioinformatics. 2011 Oct 18;12 Suppl 10:S9. doi: 10.1186/1471-2105-12-S10-S9.

19.

State reduction for network intervention in probabilistic Boolean networks.

Qian X, Ghaffari N, Ivanov I, Dougherty ER.

Bioinformatics. 2010 Dec 15;26(24):3098-104. doi: 10.1093/bioinformatics/btq575. Epub 2010 Oct 17.

20.

An extended gene protein/products Boolean network model including post-transcriptional regulation.

Benso A, Di Carlo S, Politano G, Savino A, Vasciaveo A.

Theor Biol Med Model. 2014 May 7;11 Suppl 1:S5. doi: 10.1186/1742-4682-11-S1-S5. Epub 2014 May 7.

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