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Items: 1 to 20 of 110

1.

5-methylcytosine recognition by Arabidopsis thaliana DNA glycosylases DEMETER and DML3.

Brooks SC, Fischer RL, Huh JH, Eichman BF.

Biochemistry. 2014 Apr 22;53(15):2525-32. doi: 10.1021/bi5002294. Epub 2014 Apr 9.

2.

Excision of 5-hydroxymethylcytosine by DEMETER family DNA glycosylases.

Jang H, Shin H, Eichman BF, Huh JH.

Biochem Biophys Res Commun. 2014 Apr 18;446(4):1067-72. doi: 10.1016/j.bbrc.2014.03.060. Epub 2014 Mar 21.

3.

DEMETER and REPRESSOR OF SILENCING 1 encode 5-methylcytosine DNA glycosylases.

Morales-Ruiz T, Ortega-Galisteo AP, Ponferrada-Marín MI, Martínez-Macías MI, Ariza RR, Roldán-Arjona T.

Proc Natl Acad Sci U S A. 2006 May 2;103(18):6853-8. Epub 2006 Apr 19.

4.

Arabidopsis DEMETER-LIKE proteins DML2 and DML3 are required for appropriate distribution of DNA methylation marks.

Ortega-Galisteo AP, Morales-Ruiz T, Ariza RR, Roldán-Arjona T.

Plant Mol Biol. 2008 Aug;67(6):671-81. doi: 10.1007/s11103-008-9346-0. Epub 2008 May 21.

PMID:
18493721
5.

The carboxy-terminal domain of ROS1 is essential for 5-methylcytosine DNA glycosylase activity.

Hong S, Hashimoto H, Kow YW, Zhang X, Cheng X.

J Mol Biol. 2014 Nov 11;426(22):3703-12. doi: 10.1016/j.jmb.2014.09.010. Epub 2014 Sep 21.

6.

Domain structure of the DEMETER 5-methylcytosine DNA glycosylase.

Mok YG, Uzawa R, Lee J, Weiner GM, Eichman BF, Fischer RL, Huh JH.

Proc Natl Acad Sci U S A. 2010 Nov 9;107(45):19225-30. doi: 10.1073/pnas.1014348107. Epub 2010 Oct 25.

7.

A discontinuous DNA glycosylase domain in a family of enzymes that excise 5-methylcytosine.

Ponferrada-Marín MI, Parrilla-Doblas JT, Roldán-Arjona T, Ariza RR.

Nucleic Acids Res. 2011 Mar;39(4):1473-84. doi: 10.1093/nar/gkq982. Epub 2010 Oct 29.

8.

AP endonucleases process 5-methylcytosine excision intermediates during active DNA demethylation in Arabidopsis.

Lee J, Jang H, Shin H, Choi WL, Mok YG, Huh JH.

Nucleic Acids Res. 2014 Oct;42(18):11408-18. doi: 10.1093/nar/gku834. Epub 2014 Sep 16.

9.

Methylation-independent DNA binding modulates specificity of Repressor of Silencing 1 (ROS1) and facilitates demethylation in long substrates.

Ponferrada-Marín MI, Martínez-Macías MI, Morales-Ruiz T, Roldán-Arjona T, Ariza RR.

J Biol Chem. 2010 Jul 23;285(30):23032-9. doi: 10.1074/jbc.M110.124578. Epub 2010 May 19.

10.

Molecular characterization of a putative plant homolog of MBD4 DNA glycosylase.

Ramiro-Merina Á, Ariza RR, Roldán-Arjona T.

DNA Repair (Amst). 2013 Nov;12(11):890-8. doi: 10.1016/j.dnarep.2013.08.002. Epub 2013 Aug 30.

PMID:
23994068
11.

DNA demethylation in the Arabidopsis genome.

Penterman J, Zilberman D, Huh JH, Ballinger T, Henikoff S, Fischer RL.

Proc Natl Acad Sci U S A. 2007 Apr 17;104(16):6752-7. Epub 2007 Apr 4.

12.

Targeted DNA demethylation in human cells by fusion of a plant 5-methylcytosine DNA glycosylase to a sequence-specific DNA binding domain.

Parrilla-Doblas JT, Ariza RR, Roldán-Arjona T.

Epigenetics. 2017 Apr 3;12(4):296-303. doi: 10.1080/15592294.2017.1294306. Epub 2017 Feb 23.

PMID:
28277978
13.

An invariant aspartic acid in the DNA glycosylase domain of DEMETER is necessary for transcriptional activation of the imprinted MEDEA gene.

Choi Y, Harada JJ, Goldberg RB, Fischer RL.

Proc Natl Acad Sci U S A. 2004 May 11;101(19):7481-6. Epub 2004 May 5.

14.

ROS1 5-methylcytosine DNA glycosylase is a slow-turnover catalyst that initiates DNA demethylation in a distributive fashion.

Ponferrada-Marín MI, Roldán-Arjona T, Ariza RR.

Nucleic Acids Res. 2009 Jul;37(13):4264-74. doi: 10.1093/nar/gkp390. Epub 2009 May 13.

15.

The DNA repair protein XRCC1 functions in the plant DNA demethylation pathway by stimulating cytosine methylation (5-meC) excision, gap tailoring, and DNA ligation.

Martínez-Macías MI, Córdoba-Cañero D, Ariza RR, Roldán-Arjona T.

J Biol Chem. 2013 Feb 22;288(8):5496-505. doi: 10.1074/jbc.M112.427617. Epub 2013 Jan 11.

16.

DNA demethylases target promoter transposable elements to positively regulate stress responsive genes in Arabidopsis.

Le TN, Schumann U, Smith NA, Tiwari S, Au PC, Zhu QH, Taylor JM, Kazan K, Llewellyn DJ, Zhang R, Dennis ES, Wang MB.

Genome Biol. 2014 Sep 17;15(9):458. doi: 10.1186/s13059-014-0458-3.

17.

Genetic interactions between DNA demethylation and methylation in Arabidopsis.

Penterman J, Uzawa R, Fischer RL.

Plant Physiol. 2007 Dec;145(4):1549-57. Epub 2007 Oct 19.

18.

Early steps of active DNA demethylation initiated by ROS1 glycosylase require three putative helix-invading residues.

Parrilla-Doblas JT, Ponferrada-Marín MI, Roldán-Arjona T, Ariza RR.

Nucleic Acids Res. 2013 Oct;41(18):8654-64. doi: 10.1093/nar/gkt625. Epub 2013 Jul 18.

19.

The study of a barley epigenetic regulator, HvDME, in seed development and under drought.

Kapazoglou A, Drosou V, Argiriou A, Tsaftaris AS.

BMC Plant Biol. 2013 Oct 31;13:172. doi: 10.1186/1471-2229-13-172.

20.

Role of the Arabidopsis DNA glycosylase/lyase ROS1 in active DNA demethylation.

Agius F, Kapoor A, Zhu JK.

Proc Natl Acad Sci U S A. 2006 Aug 1;103(31):11796-801. Epub 2006 Jul 24.

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