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Items: 1 to 20 of 103

1.

Diversity and dynamics of the Drosophila transcriptome.

Brown JB, Boley N, Eisman R, May GE, Stoiber MH, Duff MO, Booth BW, Wen J, Park S, Suzuki AM, Wan KH, Yu C, Zhang D, Carlson JW, Cherbas L, Eads BD, Miller D, Mockaitis K, Roberts J, Davis CA, Frise E, Hammonds AS, Olson S, Shenker S, Sturgill D, Samsonova AA, Weiszmann R, Robinson G, Hernandez J, Andrews J, Bickel PJ, Carninci P, Cherbas P, Gingeras TR, Hoskins RA, Kaufman TC, Lai EC, Oliver B, Perrimon N, Graveley BR, Celniker SE.

Nature. 2014 Aug 28;512(7515):393-9.

2.

The developmental transcriptome of Drosophila melanogaster.

Graveley BR, Brooks AN, Carlson JW, Duff MO, Landolin JM, Yang L, Artieri CG, van Baren MJ, Boley N, Booth BW, Brown JB, Cherbas L, Davis CA, Dobin A, Li R, Lin W, Malone JH, Mattiuzzo NR, Miller D, Sturgill D, Tuch BB, Zaleski C, Zhang D, Blanchette M, Dudoit S, Eads B, Green RE, Hammonds A, Jiang L, Kapranov P, Langton L, Perrimon N, Sandler JE, Wan KH, Willingham A, Zhang Y, Zou Y, Andrews J, Bickel PJ, Brenner SE, Brent MR, Cherbas P, Gingeras TR, Hoskins RA, Kaufman TC, Oliver B, Celniker SE.

Nature. 2011 Mar 24;471(7339):473-9. doi: 10.1038/nature09715. Epub 2010 Dec 22.

3.

Global patterns of tissue-specific alternative polyadenylation in Drosophila.

Smibert P, Miura P, Westholm JO, Shenker S, May G, Duff MO, Zhang D, Eads BD, Carlson J, Brown JB, Eisman RC, Andrews J, Kaufman T, Cherbas P, Celniker SE, Graveley BR, Lai EC.

Cell Rep. 2012 Mar 29;1(3):277-89. Erratum in: Cell Rep. 2013 Mar 28;3(3):969.

4.

Comparative RNA-Seq analysis reveals pervasive tissue-specific alternative polyadenylation in Caenorhabditis elegans intestine and muscles.

Blazie SM, Babb C, Wilky H, Rawls A, Park JG, Mangone M.

BMC Biol. 2015 Jan 20;13:4. doi: 10.1186/s12915-015-0116-6.

5.

The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression.

Derrien T, Johnson R, Bussotti G, Tanzer A, Djebali S, Tilgner H, Guernec G, Martin D, Merkel A, Knowles DG, Lagarde J, Veeravalli L, Ruan X, Ruan Y, Lassmann T, Carninci P, Brown JB, Lipovich L, Gonzalez JM, Thomas M, Davis CA, Shiekhattar R, Gingeras TR, Hubbard TJ, Notredame C, Harrow J, Guigó R.

Genome Res. 2012 Sep;22(9):1775-89. doi: 10.1101/gr.132159.111.

6.

Deep sequencing the circadian and diurnal transcriptome of Drosophila brain.

Hughes ME, Grant GR, Paquin C, Qian J, Nitabach MN.

Genome Res. 2012 Jul;22(7):1266-81. doi: 10.1101/gr.128876.111. Epub 2012 Apr 3.

7.

Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species.

Sanfilippo P, Wen J, Lai EC.

Genome Biol. 2017 Nov 30;18(1):229. doi: 10.1186/s13059-017-1358-0.

8.

Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution.

Wilhelm BT, Marguerat S, Watt S, Schubert F, Wood V, Goodhead I, Penkett CJ, Rogers J, Bähler J.

Nature. 2008 Jun 26;453(7199):1239-43. doi: 10.1038/nature07002. Epub 2008 May 18.

PMID:
18488015
10.
11.
12.

Genome-wide analysis of drosophila circular RNAs reveals their structural and sequence properties and age-dependent neural accumulation.

Westholm JO, Miura P, Olson S, Shenker S, Joseph B, Sanfilippo P, Celniker SE, Graveley BR, Lai EC.

Cell Rep. 2014 Dec 11;9(5):1966-1980. doi: 10.1016/j.celrep.2014.10.062. Epub 2014 Nov 26.

13.

Transcriptome dynamics through alternative polyadenylation in developmental and environmental responses in plants revealed by deep sequencing.

Shen Y, Venu RC, Nobuta K, Wu X, Notibala V, Demirci C, Meyers BC, Wang GL, Ji G, Li QQ.

Genome Res. 2011 Sep;21(9):1478-86. doi: 10.1101/gr.114744.110. Epub 2011 Aug 3.

14.

Alternative mRNA transcription, processing, and translation: insights from RNA sequencing.

de Klerk E, 't Hoen PA.

Trends Genet. 2015 Mar;31(3):128-39. doi: 10.1016/j.tig.2015.01.001. Epub 2015 Jan 30. Review.

PMID:
25648499
15.

Genome-wide identification and developmental expression profiling of long noncoding RNAs during Drosophila metamorphosis.

Chen B, Zhang Y, Zhang X, Jia S, Chen S, Kang L.

Sci Rep. 2016 Mar 21;6:23330. doi: 10.1038/srep23330.

16.

Global transcript structure resolution of high gene density genomes through multi-platform data integration.

O'Grady T, Wang X, Höner Zu Bentrup K, Baddoo M, Concha M, Flemington EK.

Nucleic Acids Res. 2016 Oct 14;44(18):e145. Epub 2016 Jul 12.

17.

Alternative transcription exceeds alternative splicing in generating the transcriptome diversity of cerebellar development.

Pal S, Gupta R, Kim H, Wickramasinghe P, Baubet V, Showe LC, Dahmane N, Davuluri RV.

Genome Res. 2011 Aug;21(8):1260-72. doi: 10.1101/gr.120535.111. Epub 2011 Jun 28.

18.
19.

Drosophila stretchin-MLCK is a novel member of the Titin/Myosin light chain kinase family.

Champagne MB, Edwards KA, Erickson HP, Kiehart DP.

J Mol Biol. 2000 Jul 21;300(4):759-77.

PMID:
10891286
20.

Bioinformatics analysis of alternative polyadenylation in green alga Chlamydomonas reinhardtii using transcriptome sequences from three different sequencing platforms.

Zhao Z, Wu X, Kumar PK, Dong M, Ji G, Li QQ, Liang C.

G3 (Bethesda). 2014 Mar 13;4(5):871-83. doi: 10.1534/g3.114.010249.

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