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Items: 1 to 20 of 68

1.

Transcriptional override: a regulatory network model of indirect responses to modulations in microRNA expression.

Hill CG, Matyunina LV, Walker D, Benigno BB, McDonald JF.

BMC Syst Biol. 2014 Mar 25;8:36. doi: 10.1186/1752-0509-8-36.

2.

The effects of MicroRNA transfections on global patterns of gene expression in ovarian cancer cells are functionally coordinated.

Shahab SW, Matyunina LV, Hill CG, Wang L, Mezencev R, Walker LD, McDonald JF.

BMC Med Genomics. 2012 Aug 1;5:33. doi: 10.1186/1755-8794-5-33.

3.

An in silico analysis of dynamic changes in microRNA expression profiles in stepwise development of nasopharyngeal carcinoma.

Luo Z, Zhang L, Li Z, Li X, Li G, Yu H, Jiang C, Dai Y, Guo X, Xiang J, Li G.

BMC Med Genomics. 2012 Jan 19;5:3. doi: 10.1186/1755-8794-5-3.

4.

MicroRNA regulation and its effects on cellular transcriptome in human immunodeficiency virus-1 (HIV-1) infected individuals with distinct viral load and CD4 cell counts.

Duskova K, Nagilla P, Le HS, Iyer P, Thalamuthu A, Martinson J, Bar-Joseph Z, Buchanan W, Rinaldo C, Ayyavoo V.

BMC Infect Dis. 2013 May 30;13:250. doi: 10.1186/1471-2334-13-250.

5.

miRNA-mRNA correlation-network modules in human prostate cancer and the differences between primary and metastatic tumor subtypes.

Zhang W, Edwards A, Fan W, Flemington EK, Zhang K.

PLoS One. 2012;7(6):e40130. doi: 10.1371/journal.pone.0040130. Epub 2012 Jun 29.

6.

Regulatory coordination of clustered microRNAs based on microRNA-transcription factor regulatory network.

Wang J, Haubrock M, Cao KM, Hua X, Zhang CY, Wingender E, Li J.

BMC Syst Biol. 2011 Dec 16;5:199. doi: 10.1186/1752-0509-5-199.

7.

Identification of microRNA-mRNA modules using microarray data.

Jayaswal V, Lutherborrow M, Ma DD, Yang YH.

BMC Genomics. 2011 Mar 6;12:138. doi: 10.1186/1471-2164-12-138.

8.

microRNA evolution in a human transcription factor and microRNA regulatory network.

Qiu C, Wang J, Yao P, Wang E, Cui Q.

BMC Syst Biol. 2010 Jun 29;4:90. doi: 10.1186/1752-0509-4-90.

9.

A systems' biology approach to study microRNA-mediated gene regulatory networks.

Lai X, Bhattacharya A, Schmitz U, Kunz M, Vera J, Wolkenhauer O.

Biomed Res Int. 2013;2013:703849. doi: 10.1155/2013/703849. Epub 2013 Nov 17.

10.

Evidence for the complexity of microRNA-mediated regulation in ovarian cancer: a systems approach.

Shahab SW, Matyunina LV, Mezencev R, Walker LD, Bowen NJ, Benigno BB, McDonald JF.

PLoS One. 2011;6(7):e22508. doi: 10.1371/journal.pone.0022508. Epub 2011 Jul 21.

11.

Exploring complex miRNA-mRNA interactions with Bayesian networks by splitting-averaging strategy.

Liu B, Li J, Tsykin A, Liu L, Gaur AB, Goodall GJ.

BMC Bioinformatics. 2009 Dec 10;10:408. doi: 10.1186/1471-2105-10-408.

12.

A least angle regression model for the prediction of canonical and non-canonical miRNA-mRNA interactions.

Engelmann JC, Spang R.

PLoS One. 2012;7(7):e40634. doi: 10.1371/journal.pone.0040634. Epub 2012 Jul 17.

13.

Widespread inference of weighted microRNA-mediated gene regulation in cancer transcriptome analysis.

Suzuki HI, Mihira H, Watabe T, Sugimoto K, Miyazono K.

Nucleic Acids Res. 2013 Mar 1;41(5):e62. doi: 10.1093/nar/gks1439. Epub 2012 Dec 28. Erratum in: Nucleic Acids Res. 2013 May 1;41(10):5553.

14.

miRFANs: an integrated database for Arabidopsis thaliana microRNA function annotations.

Liu H, Jin T, Liao R, Wan L, Xu B, Zhou S, Guan J.

BMC Plant Biol. 2012 May 14;12:68. doi: 10.1186/1471-2229-12-68.

15.

Prioritizing breast cancer subtype related miRNAs using miRNA-mRNA dysregulated relationships extracted from their dual expression profiling.

Hua L, Zhou P, Li L, Liu H, Yang Z.

J Theor Biol. 2013 Aug 21;331:1-11. doi: 10.1016/j.jtbi.2013.04.008. Epub 2013 Apr 22.

PMID:
23619378
16.

Inter- and intra-combinatorial regulation by transcription factors and microRNAs.

Zhou Y, Ferguson J, Chang JT, Kluger Y.

BMC Genomics. 2007 Oct 30;8:396.

17.

Combinatorial network of transcriptional regulation and microRNA regulation in human cancer.

Yu H, Tu K, Wang YJ, Mao JZ, Xie L, Li YY, Li YX.

BMC Syst Biol. 2012 Jun 12;6:61. doi: 10.1186/1752-0509-6-61.

18.

Integrated analyses of microRNAs demonstrate their widespread influence on gene expression in high-grade serous ovarian carcinoma.

Creighton CJ, Hernandez-Herrera A, Jacobsen A, Levine DA, Mankoo P, Schultz N, Du Y, Zhang Y, Larsson E, Sheridan R, Xiao W, Spellman PT, Getz G, Wheeler DA, Perou CM, Gibbs RA, Sander C, Hayes DN, Gunaratne PH; Cancer Genome Atlas Research Network.

PLoS One. 2012;7(3):e34546. doi: 10.1371/journal.pone.0034546. Epub 2012 Mar 29.

19.

Reconstructing dynamic microRNA-regulated interaction networks.

Schulz MH, Pandit KV, Lino Cardenas CL, Ambalavanan N, Kaminski N, Bar-Joseph Z.

Proc Natl Acad Sci U S A. 2013 Sep 24;110(39):15686-91. doi: 10.1073/pnas.1303236110. Epub 2013 Aug 28.

20.

Analysis of microRNA transcriptome by deep sequencing of small RNA libraries of peripheral blood.

Vaz C, Ahmad HM, Sharma P, Gupta R, Kumar L, Kulshreshtha R, Bhattacharya A.

BMC Genomics. 2010 May 7;11:288. doi: 10.1186/1471-2164-11-288.

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