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Long non-coding RNA and alternative splicing modulations in Parkinson's leukocytes identified by RNA sequencing.

Soreq L, Guffanti A, Salomonis N, Simchovitz A, Israel Z, Bergman H, Soreq H.

PLoS Comput Biol. 2014 Mar 20;10(3):e1003517. doi: 10.1371/journal.pcbi.1003517. eCollection 2014 Mar. Erratum in: PLoS Comput Biol. 2014 May;10(5):e1003647.


Whole transcriptome RNA sequencing data from blood leukocytes derived from Parkinson's disease patients prior to and following deep brain stimulation treatment.

Soreq L, Salomonis N, Guffanti A, Bergman H, Israel Z, Soreq H.

Genom Data. 2014 Nov 22;3:57-60. doi: 10.1016/j.gdata.2014.11.009. eCollection 2015 Mar.


SRRM2, a potential blood biomarker revealing high alternative splicing in Parkinson's disease.

Shehadeh LA, Yu K, Wang L, Guevara A, Singer C, Vance J, Papapetropoulos S.

PLoS One. 2010 Feb 8;5(2):e9104. doi: 10.1371/journal.pone.0009104.


Deep brain stimulation modulates nonsense-mediated RNA decay in Parkinson's patients leukocytes.

Soreq L, Bergman H, Israel Z, Soreq H.

BMC Genomics. 2013 Jul 16;14:478. doi: 10.1186/1471-2164-14-478.


Small RNA sequencing-microarray analyses in Parkinson leukocytes reveal deep brain stimulation-induced splicing changes that classify brain region transcriptomes.

Soreq L, Salomonis N, Bronstein M, Greenberg DS, Israel Z, Bergman H, Soreq H.

Front Mol Neurosci. 2013 May 13;6:10. doi: 10.3389/fnmol.2013.00010. eCollection 2013.


Exon arrays reveal alternative splicing aberrations in Parkinson's disease leukocytes.

Soreq L, Bergman H, Israel Z, Soreq H.

Neurodegener Dis. 2012;10(1-4):203-6. doi: 10.1159/000332598. Epub 2011 Dec 9.


Roles of long noncoding RNAs in brain development, functional diversification and neurodegenerative diseases.

Wu P, Zuo X, Deng H, Liu X, Liu L, Ji A.

Brain Res Bull. 2013 Aug;97:69-80. doi: 10.1016/j.brainresbull.2013.06.001. Epub 2013 Jun 10. Review.


Prediction of novel long non-coding RNAs based on RNA-Seq data of mouse Klf1 knockout study.

Sun L, Zhang Z, Bailey TL, Perkins AC, Tallack MR, Xu Z, Liu H.

BMC Bioinformatics. 2012 Dec 13;13:331. doi: 10.1186/1471-2105-13-331.


Investigation of Long Non-coding RNA Expression Profiles in the Substantia Nigra of Parkinson's Disease.

Ni Y, Huang H, Chen Y, Cao M, Zhou H, Zhang Y.

Cell Mol Neurobiol. 2017 Mar;37(2):329-338. doi: 10.1007/s10571-016-0373-0. Epub 2016 May 5.


Overlapping molecular signatures in Parkinson's patients' leukocytes before and after treatment and in mouse model brain regions.

Soreq L, Bergman H, Israel Z, Soreq H.

CNS Neurol Disord Drug Targets. 2013 Dec;12(8):1086-93. Review.


Identification of important long non-coding RNAs and highly recurrent aberrant alternative splicing events in hepatocellular carcinoma through integrative analysis of multiple RNA-Seq datasets.

Zhang L, Liu X, Zhang X, Chen R.

Mol Genet Genomics. 2016 Jun;291(3):1035-51. doi: 10.1007/s00438-015-1163-y. Epub 2015 Dec 28.


Transcriptome sequencing reveals thousands of novel long non-coding RNAs in B cell lymphoma.

Verma A, Jiang Y, Du W, Fairchild L, Melnick A, Elemento O.

Genome Med. 2015 Nov 1;7:110. doi: 10.1186/s13073-015-0230-7.


A systematic comparison and evaluation of high density exon arrays and RNA-seq technology used to unravel the peripheral blood transcriptome of sickle cell disease.

Raghavachari N, Barb J, Yang Y, Liu P, Woodhouse K, Levy D, O'Donnell CJ, Munson PJ, Kato GJ.

BMC Med Genomics. 2012 Jun 29;5:28. doi: 10.1186/1755-8794-5-28.


Transcriptome profiling of lncRNA and co-expression networks in esophageal squamous cell carcinoma by RNA sequencing.

Li Y, Shi X, Yang W, Lu Z, Wang P, Chen Z, He J.

Tumour Biol. 2016 Oct;37(10):13091-13100. Epub 2016 Jul 23.


Transcriptome profiling in Parkinson's leukocytes: from early diagnostics to neuroimmune therapeutic prospects.

Simchovitz A, Soreq L, Soreq H.

Curr Opin Pharmacol. 2016 Feb;26:102-9. doi: 10.1016/j.coph.2015.10.007. Epub 2015 Nov 21. Review.


Integrating RNA-seq and ChIP-seq data to characterize long non-coding RNAs in Drosophila melanogaster.

Chen MJ, Chen LK, Lai YS, Lin YY, Wu DC, Tung YA, Liu KY, Shih HT, Chen YJ, Lin YL, Ma LT, Huang JL, Wu PC, Hong MY, Chu FH, Wu JT, Li WH, Chen CY.

BMC Genomics. 2016 Mar 11;17:220. doi: 10.1186/s12864-016-2457-0.


Analyzing alternative splicing data of splice junction arrays from Parkinson patients' leukocytes before and after deep brain stimulation as compared with control donors.

Soreq L, Salomonis N, Israel Z, Bergman H, Soreq H.

Genom Data. 2015 Jul 16;5:340-3. doi: 10.1016/j.gdata.2015.07.014. eCollection 2015 Sep.


Transcriptomic analysis of the stress response to weaning at housing in bovine leukocytes using RNA-seq technology.

O'Loughlin A, Lynn DJ, McGee M, Doyle S, McCabe M, Earley B.

BMC Genomics. 2012 Jun 18;13:250. doi: 10.1186/1471-2164-13-250.


Alternative Splicing Signatures in RNA-seq Data: Percent Spliced in (PSI).

Schafer S, Miao K, Benson CC, Heinig M, Cook SA, Hubner N.

Curr Protoc Hum Genet. 2015 Oct 6;87:11.16.1-14. doi: 10.1002/0471142905.hg1116s87.


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