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Items: 1 to 20 of 91

1.

Refining network reconstruction based on functional reliability.

Zhang Y, Ouyang Q, Geng Z.

J Theor Biol. 2014 Jul 21;353:170-8. doi: 10.1016/j.jtbi.2014.02.041. Epub 2014 Mar 11.

PMID:
24631047
2.

Modelling gene and protein regulatory networks with answer set programming.

Fayruzov T, Janssen J, Vermeir D, Cornelis C, De Cock M.

Int J Data Min Bioinform. 2011;5(2):209-29.

PMID:
21544955
3.

Cell-cycle control of gene expression in budding and fission yeast.

Bähler J.

Annu Rev Genet. 2005;39:69-94. Review.

PMID:
16285853
4.

Scalable steady state analysis of Boolean biological regulatory networks.

Ay F, Xu F, Kahveci T.

PLoS One. 2009 Dec 1;4(12):e7992. doi: 10.1371/journal.pone.0007992.

5.

A reverse engineering approach to optimize experiments for the construction of biological regulatory networks.

Zhang X, Shao B, Wu Y, Qi O.

PLoS One. 2013 Sep 19;8(9):e75931. doi: 10.1371/journal.pone.0075931. eCollection 2013.

6.

Neutral space analysis for a Boolean network model of the fission yeast cell cycle network.

Ruz GA, Timmermann T, Barrera J, Goles E.

Biol Res. 2014 Nov 25;47:64. doi: 10.1186/0717-6287-47-64.

7.

Deconstruction and dynamical robustness of regulatory networks: application to the yeast cell cycle networks.

Goles E, Montalva M, Ruz GA.

Bull Math Biol. 2013 Jun;75(6):939-66. doi: 10.1007/s11538-012-9794-1. Epub 2012 Nov 28.

PMID:
23188157
8.

Inferring Boolean network structure via correlation.

Maucher M, Kracher B, Kühl M, Kestler HA.

Bioinformatics. 2011 Jun 1;27(11):1529-36. doi: 10.1093/bioinformatics/btr166. Epub 2011 Apr 5.

PMID:
21471013
9.

Minimum network constraint on reverse engineering to develop biological regulatory networks.

Shao B, Wu J, Tian B, Ouyang Q.

J Theor Biol. 2015 Sep 7;380:9-15. doi: 10.1016/j.jtbi.2015.05.005. Epub 2015 May 14.

PMID:
25981630
10.

Anomaly detection in gene expression via stochastic models of gene regulatory networks.

Kim H, Gelenbe E.

BMC Genomics. 2009 Dec 3;10 Suppl 3:S26. doi: 10.1186/1471-2164-10-S3-S26.

11.

Cell cycle: complex evolution.

Sherlock G.

Nature. 2006 Oct 5;443(7111):513-5. No abstract available.

PMID:
17024077
12.

Overexpression limits of fission yeast cell-cycle regulators in vivo and in silico.

Moriya H, Chino A, Kapuy O, Csikász-Nagy A, Novák B.

Mol Syst Biol. 2011 Dec 6;7:556. doi: 10.1038/msb.2011.91.

13.

Boolean network model predicts knockout mutant phenotypes of fission yeast.

Davidich MI, Bornholdt S.

PLoS One. 2013 Sep 19;8(9):e71786. doi: 10.1371/journal.pone.0071786. eCollection 2013.

14.

Reverse engineering Boolean networks: from Bernoulli mixture models to rule based systems.

Saeed M, Ijaz M, Javed K, Babri HA.

PLoS One. 2012;7(12):e51006. doi: 10.1371/journal.pone.0051006. Epub 2012 Dec 17.

15.

A new multiple regression approach for the construction of genetic regulatory networks.

Zhang SQ, Ching WK, Tsing NK, Leung HY, Guo D.

Artif Intell Med. 2010 Feb-Mar;48(2-3):153-60. doi: 10.1016/j.artmed.2009.11.001. Epub 2009 Dec 5.

PMID:
19963359
16.

Dynamical and topological robustness of the mammalian cell cycle network: a reverse engineering approach.

Ruz GA, Goles E, Montalva M, Fogel GB.

Biosystems. 2014 Jan;115:23-32. doi: 10.1016/j.biosystems.2013.10.007. Epub 2013 Nov 6.

PMID:
24212100
17.

A fast and inexpensive method for random spore analysis in Schizosaccharomyces pombe.

Khare AK, Singh B, Singh J.

Yeast. 2011 Jul;28(7):527-33. doi: 10.1002/yea.1855. Epub 2011 May 6.

18.

Binary threshold networks as a natural null model for biological networks.

Rybarsch M, Bornholdt S.

Phys Rev E Stat Nonlin Soft Matter Phys. 2012 Aug;86(2 Pt 2):026114. Epub 2012 Aug 27.

PMID:
23005832
19.

Co-evolution of transcriptional and post-translational cell-cycle regulation.

Jensen LJ, Jensen TS, de Lichtenberg U, Brunak S, Bork P.

Nature. 2006 Oct 5;443(7111):594-7. Epub 2006 Sep 27.

PMID:
17006448
20.

Cell cycle control genes in fission yeast and mammalian cells.

Lee M, Nurse P.

Trends Genet. 1988 Oct;4(10):287-90. Review. No abstract available.

PMID:
3076289

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