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Items: 1 to 20 of 107

1.

Ribonucleosides for an artificially expanded genetic information system.

Kim HJ, Leal NA, Hoshika S, Benner SA.

J Org Chem. 2014 Apr 4;79(7):3194-9. doi: 10.1021/jo402665d. Epub 2014 Mar 18.

2.

Artificially expanded genetic information system: a new base pair with an alternative hydrogen bonding pattern.

Yang Z, Hutter D, Sheng P, Sismour AM, Benner SA.

Nucleic Acids Res. 2006;34(21):6095-101. Epub 2006 Oct 29.

3.

Transcription, reverse transcription, and analysis of RNA containing artificial genetic components.

Leal NA, Kim HJ, Hoshika S, Kim MJ, Carrigan MA, Benner SA.

ACS Synth Biol. 2015 Apr 17;4(4):407-13. doi: 10.1021/sb500268n. Epub 2014 Aug 19.

PMID:
25137127
4.

Short and straightforward synthesis of triphosphates of artificial nucleobase pairs displaying unconventional pairing scheme.

Kore AR, Yang B, Srinivasan B.

Nucleosides Nucleotides Nucleic Acids. 2014;33(12):767-73. doi: 10.1080/15257770.2014.938754.

PMID:
25372992
5.

Biophysics of Artificially Expanded Genetic Information Systems. Thermodynamics of DNA Duplexes Containing Matches and Mismatches Involving 2-Amino-3-nitropyridin-6-one (Z) and Imidazo[1,2-a]-1,3,5-triazin-4(8H)one (P).

Wang X, Hoshika S, Peterson RJ, Kim MJ, Benner SA, Kahn JD.

ACS Synth Biol. 2017 May 19;6(5):782-792. doi: 10.1021/acssynbio.6b00224. Epub 2017 Feb 9.

PMID:
28094993
6.

A Single Deoxynucleoside Kinase Variant from Drosophila melanogaster Synthesizes Monophosphates of Nucleosides That Are Components of an Expanded Genetic System.

Matsuura MF, Winiger CB, Shaw RW, Kim MJ, Kim MS, Daugherty AB, Chen F, Moussatche P, Moses JD, Lutz S, Benner SA.

ACS Synth Biol. 2017 Mar 17;6(3):388-394. doi: 10.1021/acssynbio.6b00228. Epub 2016 Dec 9.

PMID:
27935283
7.

Recognition of an expanded genetic alphabet by type-II restriction endonucleases and their application to analyze polymerase fidelity.

Chen F, Yang Z, Yan M, Alvarado JB, Wang G, Benner SA.

Nucleic Acids Res. 2011 May;39(9):3949-61. doi: 10.1093/nar/gkq1274. Epub 2011 Jan 17.

8.

Toward an Expanded Genome: Structural and Computational Characterization of an Artificially Expanded Genetic Information System.

Richards NGJ, Georgiadis MM.

Acc Chem Res. 2017 Jun 20;50(6):1375-1382. doi: 10.1021/acs.accounts.6b00655. Epub 2017 Jun 8.

PMID:
28594167
9.

A unique fluorescent base analogue for the expansion of the genetic alphabet.

Kimoto M, Mitsui T, Yokoyama S, Hirao I.

J Am Chem Soc. 2010 Apr 14;132(14):4988-9. doi: 10.1021/ja100806c.

PMID:
20334374
10.

Expanded Genetic Alphabets: Managing Nucleotides That Lack Tautomeric, Protonated, or Deprotonated Versions Complementary to Natural Nucleotides.

Winiger CB, Shaw RW, Kim MJ, Moses JD, Matsuura MF, Benner SA.

ACS Synth Biol. 2017 Feb 17;6(2):194-200. doi: 10.1021/acssynbio.6b00193. Epub 2016 Oct 7.

PMID:
27648724
11.

Double-coding nucleic acids: introduction of a nucleobase sequence in the major groove of the DNA duplex using double-headed nucleotides.

Kumar P, Sorinas AF, Nielsen LJ, Slot M, Skytte K, Nielsen AS, Jensen MD, Sharma PK, Vester B, Petersen M, Nielsen P.

J Org Chem. 2014 Sep 5;79(17):8020-30. doi: 10.1021/jo501151w. Epub 2014 Aug 13.

PMID:
25089572
12.

Structural basis for a six nucleotide genetic alphabet.

Georgiadis MM, Singh I, Kellett WF, Hoshika S, Benner SA, Richards NG.

J Am Chem Soc. 2015 Jun 3;137(21):6947-55. doi: 10.1021/jacs.5b03482. Epub 2015 May 18.

13.

Unnatural base pairs mediate the site-specific incorporation of an unnatural hydrophobic component into RNA transcripts.

Endo M, Mitsui T, Okuni T, Kimoto M, Hirao I, Yokoyama S.

Bioorg Med Chem Lett. 2004 May 17;14(10):2593-6.

PMID:
15109659
14.

Non-hydrogen bonding 'terminator' nucleosides increase the 3'-end homogeneity of enzymatic RNA and DNA synthesis.

Moran S, Ren RX, Sheils CJ, Rumney S 4th, Kool ET.

Nucleic Acids Res. 1996 Jun 1;24(11):2044-52.

16.

Efficient replication between non-hydrogen-bonded nucleoside shape analogs.

Morales JC, Kool ET.

Nat Struct Biol. 1998 Nov;5(11):950-4.

PMID:
9808038
17.

Synthesis and properties of 5-cyano-substituted nucleoside analog with a donor-donor-acceptor hydrogen-bonding pattern.

Kim HJ, Chen F, Benner SA.

J Org Chem. 2012 Apr 6;77(7):3664-9. doi: 10.1021/jo300230z. Epub 2012 Mar 13.

PMID:
22390337
19.

Base-sequence-dependent sliding of proteins on DNA.

Barbi M, Place C, Popkov V, Salerno M.

Phys Rev E Stat Nonlin Soft Matter Phys. 2004 Oct;70(4 Pt 1):041901. Epub 2004 Oct 6.

PMID:
15600429
20.

Assays To Detect the Formation of Triphosphates of Unnatural Nucleotides: Application to Escherichia coli Nucleoside Diphosphate Kinase.

Matsuura MF, Shaw RW, Moses JD, Kim HJ, Kim MJ, Kim MS, Hoshika S, Karalkar N, Benner SA.

ACS Synth Biol. 2016 Mar 18;5(3):234-40. doi: 10.1021/acssynbio.5b00172. Epub 2016 Feb 1.

PMID:
26829203

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