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Items: 1 to 20 of 176

1.

Simultaneous rapid sequencing of multiple RNA virus genomes.

Neill JD, Bayles DO, Ridpath JF.

J Virol Methods. 2014 Jun;201:68-72. doi: 10.1016/j.jviromet.2014.02.016. Epub 2014 Feb 28.

2.

A robust and cost-effective approach to sequence and analyze complete genomes of small RNA viruses.

Dimitrov KM, Sharma P, Volkening JD, Goraichuk IV, Wajid A, Rehmani SF, Basharat A, Shittu I, Joannis TM, Miller PJ, Afonso CL.

Virol J. 2017 Apr 7;14(1):72. doi: 10.1186/s12985-017-0741-5.

3.

A new approach to determining whole viral genomic sequences including termini using a single deep sequencing run.

Alfson KJ, Beadles MW, Griffiths A.

J Virol Methods. 2014 Nov;208:1-5. doi: 10.1016/j.jviromet.2014.07.023. Epub 2014 Jul 27.

PMID:
25075935
4.

Simultaneous and complete genome sequencing of influenza A and B with high coverage by Illumina MiSeq Platform.

Rutvisuttinunt W, Chinnawirotpisan P, Simasathien S, Shrestha SK, Yoon IK, Klungthong C, Fernandez S.

J Virol Methods. 2013 Nov;193(2):394-404. doi: 10.1016/j.jviromet.2013.07.001. Epub 2013 Jul 12.

5.

A fast and robust method for full genome sequencing of Porcine Reproductive and Respiratory Syndrome Virus (PRRSV) Type 1 and Type 2.

Kvisgaard LK, Hjulsager CK, Fahnøe U, Breum SØ, Ait-Ali T, Larsen LE.

J Virol Methods. 2013 Nov;193(2):697-705. doi: 10.1016/j.jviromet.2013.07.019. Epub 2013 Jul 24.

6.

A Universal Next-Generation Sequencing Protocol To Generate Noninfectious Barcoded cDNA Libraries from High-Containment RNA Viruses.

Moser LA, Ramirez-Carvajal L, Puri V, Pauszek SJ, Matthews K, Dilley KA, Mullan C, McGraw J, Khayat M, Beeri K, Yee A, Dugan V, Heise MT, Frieman MB, Rodriguez LL, Bernard KA, Wentworth DE, Stockwell TB, Shabman RS.

mSystems. 2016 Jun 7;1(3). pii: e00039-15. eCollection 2016 May-Jun.

7.

Mixed triple: allied viruses in unique recent isolates of highly virulent type 2 bovine viral diarrhea virus detected by deep sequencing.

Jenckel M, Höper D, Schirrmeier H, Reimann I, Goller KV, Hoffmann B, Beer M.

J Virol. 2014 Jun;88(12):6983-92. doi: 10.1128/JVI.00620-14. Epub 2014 Apr 9.

8.

Rapid next-generation sequencing of dengue, EV-A71 and RSV-A viruses.

Baronti C, Piorkowski G, Leparc-Goffart I, de Lamballerie X, Dubot-Pérès A.

J Virol Methods. 2015 Dec 15;226:7-14. doi: 10.1016/j.jviromet.2015.09.004. Epub 2015 Sep 14.

PMID:
26376168
9.

Ultrasensitive single-genome sequencing: accurate, targeted, next generation sequencing of HIV-1 RNA.

Boltz VF, Rausch J, Shao W, Hattori J, Luke B, Maldarelli F, Mellors JW, Kearney MF, Coffin JM.

Retrovirology. 2016 Dec 20;13(1):87. doi: 10.1186/s12977-016-0321-6.

10.

One-step protocol for amplification of near full-length cDNA of the rabies virus genome.

Campos AC, Melo FL, Romano CM, Araujo DB, Cunha EM, Sacramento DR, de Andrade Zanotto PM, Durigon EL, Favoretto SR.

J Virol Methods. 2011 Jun;174(1-2):1-6. doi: 10.1016/j.jviromet.2011.03.030. Epub 2011 Apr 5.

PMID:
21473884
12.

Rapid full-length cloning of nonpolyadenylated RNA virus genomes.

Beckett R, Miller WA.

Curr Protoc Microbiol. 2007 Feb;Chapter 16:Unit 16F.3. doi: 10.1002/9780471729259.mc16f03s4.

PMID:
18770619
13.

Comparison of three next-generation sequencing platforms for metagenomic sequencing and identification of pathogens in blood.

Frey KG, Herrera-Galeano JE, Redden CL, Luu TV, Servetas SL, Mateczun AJ, Mokashi VP, Bishop-Lilly KA.

BMC Genomics. 2014 Feb 4;15:96. doi: 10.1186/1471-2164-15-96.

14.

SearchSmallRNA: a graphical interface tool for the assemblage of viral genomes using small RNA libraries data.

de Andrade RR, Vaslin MF.

Virol J. 2014 Mar 7;11:45. doi: 10.1186/1743-422X-11-45.

15.

Unbiased Deep Sequencing of RNA Viruses from Clinical Samples.

Matranga CB, Gladden-Young A, Qu J, Winnicki S, Nosamiefan D, Levin JZ, Sabeti PC.

J Vis Exp. 2016 Jul 2;(113). doi: 10.3791/54117.

16.

An approach for identification of unknown viruses using sequencing-by-hybridization.

Katoski SE, Meyer H, Ibrahim S.

J Med Virol. 2015 Sep;87(9):1616-24. doi: 10.1002/jmv.24196. Epub 2015 May 14.

PMID:
25976068
17.

Deep sequencing as a method of typing bluetongue virus isolates.

Rao PP, Reddy YN, Ganesh K, Nair SG, Niranjan V, Hegde NR.

J Virol Methods. 2013 Nov;193(2):314-9. doi: 10.1016/j.jviromet.2013.06.033. Epub 2013 Jul 4.

PMID:
23831448
18.

Analysis of the genetic diversity of influenza A viruses using next-generation DNA sequencing.

Van den Hoecke S, Verhelst J, Vuylsteke M, Saelens X.

BMC Genomics. 2015 Feb 14;16:79. doi: 10.1186/s12864-015-1284-z.

19.

Evaluation of high-throughput sequencing for identifying known and unknown viruses in biological samples.

Cheval J, Sauvage V, Frangeul L, Dacheux L, Guigon G, Dumey N, Pariente K, Rousseaux C, Dorange F, Berthet N, Brisse S, Moszer I, Bourhy H, Manuguerra CJ, Lecuit M, Burguiere A, Caro V, Eloit M.

J Clin Microbiol. 2011 Sep;49(9):3268-75. doi: 10.1128/JCM.00850-11. Epub 2011 Jun 29.

20.

Identification of hepatotropic viruses from plasma using deep sequencing: a next generation diagnostic tool.

Law J, Jovel J, Patterson J, Ford G, O'keefe S, Wang W, Meng B, Song D, Zhang Y, Tian Z, Wasilenko ST, Rahbari M, Mitchell T, Jordan T, Carpenter E, Mason AL, Wong GK.

PLoS One. 2013 Apr 17;8(4):e60595. doi: 10.1371/journal.pone.0060595. Print 2013.

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