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Items: 1 to 20 of 158


Construction of pseudomolecule sequences of the aus rice cultivar Kasalath for comparative genomics of Asian cultivated rice.

Sakai H, Kanamori H, Arai-Kichise Y, Shibata-Hatta M, Ebana K, Oono Y, Kurita K, Fujisawa H, Katagiri S, Mukai Y, Hamada M, Itoh T, Matsumoto T, Katayose Y, Wakasa K, Yano M, Wu J.

DNA Res. 2014 Aug;21(4):397-405. doi: 10.1093/dnares/dsu006. Epub 2014 Feb 26.


A BAC physical map of aus rice cultivar 'Kasalath', and the map-based genomic sequence of 'Kasalath' chromosome 1.

Kanamori H, Fujisawa M, Katagiri S, Oono Y, Fujisawa H, Karasawa W, Kurita K, Sasaki H, Mori S, Hamada M, Mukai Y, Yazawa T, Mizuno H, Namiki N, Sasaki T, Katayose Y, Matsumoto T, Wu J.

Plant J. 2013 Nov;76(4):699-708. doi: 10.1111/tpj.12317. Epub 2013 Oct 5.


Genome-wide DNA polymorphisms in seven rice cultivars of temperate and tropical japonica groups.

Arai-Kichise Y, Shiwa Y, Ebana K, Shibata-Hatta M, Yoshikawa H, Yano M, Wakasa K.

PLoS One. 2014 Jan 21;9(1):e86312. doi: 10.1371/journal.pone.0086312. eCollection 2014.


Discovery of genome-wide DNA polymorphisms in a landrace cultivar of Japonica rice by whole-genome sequencing.

Arai-Kichise Y, Shiwa Y, Nagasaki H, Ebana K, Yoshikawa H, Yano M, Wakasa K.

Plant Cell Physiol. 2011 Feb;52(2):274-82. doi: 10.1093/pcp/pcr003. Epub 2011 Jan 21.


Genome-wide analysis of Dongxiang wild rice (Oryza rufipogon Griff.) to investigate lost/acquired genes during rice domestication.

Zhang F, Xu T, Mao L, Yan S, Chen X, Wu Z, Chen R, Luo X, Xie J, Gao S.

BMC Plant Biol. 2016 Apr 26;16:103. doi: 10.1186/s12870-016-0788-2.


Genome-wide DNA polymorphism in the indica rice varieties RGD-7S and Taifeng B as revealed by whole genome re-sequencing.

Fu CY, Liu WG, Liu DL, Li JH, Zhu MS, Liao YL, Liu ZR, Zeng XQ, Wang F.

Genome. 2016 Mar;59(3):197-207. doi: 10.1139/gen-2015-0101.


Developing high throughput genotyped chromosome segment substitution lines based on population whole-genome re-sequencing in rice (Oryza sativa L.).

Xu J, Zhao Q, Du P, Xu C, Wang B, Feng Q, Liu Q, Tang S, Gu M, Han B, Liang G.

BMC Genomics. 2010 Nov 24;11:656. doi: 10.1186/1471-2164-11-656.


Genome wide re-sequencing of newly developed Rice Lines from common wild rice (Oryza rufipogon Griff.) for the identification of NBS-LRR genes.

Liu W, Ghouri F, Yu H, Li X, Yu S, Shahid MQ, Liu X.

PLoS One. 2017 Jul 11;12(7):e0180662. doi: 10.1371/journal.pone.0180662. eCollection 2017.


Comparative sequence analyses of the major quantitative trait locus phosphorus uptake 1 (Pup1) reveal a complex genetic structure.

Heuer S, Lu X, Chin JH, Tanaka JP, Kanamori H, Matsumoto T, De Leon T, Ulat VJ, Ismail AM, Yano M, Wissuwa M.

Plant Biotechnol J. 2009 Jun;7(5):456-7. doi: 10.1111/j.1467-7652.2009.00415.x.


Genomewide discovery of DNA polymorphisms in rice cultivars with contrasting drought and salinity stress response and their functional relevance.

Jain M, Moharana KC, Shankar R, Kumari R, Garg R.

Plant Biotechnol J. 2014 Feb;12(2):253-64. doi: 10.1111/pbi.12133. Epub 2013 Oct 30.


Development of genome-wide DNA polymorphism database for map-based cloning of rice genes.

Shen YJ, Jiang H, Jin JP, Zhang ZB, Xi B, He YY, Wang G, Wang C, Qian L, Li X, Yu QB, Liu HJ, Chen DH, Gao JH, Huang H, Shi TL, Yang ZN.

Plant Physiol. 2004 Jul;135(3):1198-205.


Genome-wide DNA polymorphisms in elite indica rice inbreds discovered by whole-genome sequencing.

Subbaiyan GK, Waters DL, Katiyar SK, Sadananda AR, Vaddadi S, Henry RJ.

Plant Biotechnol J. 2012 Aug;10(6):623-34. doi: 10.1111/j.1467-7652.2011.00676.x. Epub 2012 Jan 6.


Characterization of OsLCT1, a cadmium transporter from indica rice (Oryza sativa).

Uraguchi S, Kamiya T, Clemens S, Fujiwara T.

Physiol Plant. 2014 Jul;151(3):339-47. doi: 10.1111/ppl.12189. Epub 2014 Apr 17.


Direct chloroplast sequencing: comparison of sequencing platforms and analysis tools for whole chloroplast barcoding.

Brozynska M, Furtado A, Henry RJ.

PLoS One. 2014 Oct 17;9(10):e110387. doi: 10.1371/journal.pone.0110387. eCollection 2014.


Development of genome-wide insertion/deletion markers in rice based on graphic pipeline platform.

Lü Y, Cui X, Li R, Huang P, Zong J, Yao D, Li G, Zhang D, Yuan Z.

J Integr Plant Biol. 2015 Nov;57(11):980-91. doi: 10.1111/jipb.12354. Epub 2015 Sep 1.


De novo Transcriptome Assembly of Common Wild Rice (Oryza rufipogon Griff.) and Discovery of Drought-Response Genes in Root Tissue Based on Transcriptomic Data.

Tian XJ, Long Y, Wang J, Zhang JW, Wang YY, Li WM, Peng YF, Yuan QH, Pei XW.

PLoS One. 2015 Jul 2;10(7):e0131455. doi: 10.1371/journal.pone.0131455. eCollection 2015.


Deep re-sequencing of a widely used maintainer line of hybrid rice for discovery of DNA polymorphisms and evaluation of genetic diversity.

Hu Y, Mao B, Peng Y, Sun Y, Pan Y, Xia Y, Sheng X, Li Y, Tang L, Yuan L, Zhao B.

Mol Genet Genomics. 2014 Jun;289(3):303-15. doi: 10.1007/s00438-013-0807-z. Epub 2014 Jan 12.


Indica rice genome assembly, annotation and mining of blast disease resistance genes.

Mahesh HB, Shirke MD, Singh S, Rajamani A, Hittalmani S, Wang GL, Gowda M.

BMC Genomics. 2016 Mar 16;17:242. doi: 10.1186/s12864-016-2523-7.


Exploring the rice dispensable genome using a metagenome-like assembly strategy.

Yao W, Li G, Zhao H, Wang G, Lian X, Xie W.

Genome Biol. 2015 Sep 7;16:187. doi: 10.1186/s13059-015-0757-3.


Genome-wide DNA polymorphisms in Kavuni, a traditional rice cultivar with nutritional and therapeutic properties.

Rathinasabapathi P, Purushothaman N, Parani M.

Genome. 2016 May;59(5):363-6. doi: 10.1139/gen-2016-0025. Epub 2016 Mar 24.


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