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Items: 1 to 20 of 105

1.

Simultaneous reconstruction of evolutionary history and epidemiological dynamics from viral sequences with the birth-death SIR model.

Kühnert D, Stadler T, Vaughan TG, Drummond AJ.

J R Soc Interface. 2014 Feb 26;11(94):20131106. doi: 10.1098/rsif.2013.1106. Print 2014 May 6.

2.

Birth-death skyline plot reveals temporal changes of epidemic spread in HIV and hepatitis C virus (HCV).

Stadler T, Kühnert D, Bonhoeffer S, Drummond AJ.

Proc Natl Acad Sci U S A. 2013 Jan 2;110(1):228-33. doi: 10.1073/pnas.1207965110. Epub 2012 Dec 17.

3.

Inferring epidemiological dynamics with Bayesian coalescent inference: the merits of deterministic and stochastic models.

Popinga A, Vaughan T, Stadler T, Drummond AJ.

Genetics. 2015 Feb;199(2):595-607. doi: 10.1534/genetics.114.172791. Epub 2014 Dec 19.

4.

Molecular epidemiology and putative origin of hepatitis C virus in random volunteers from Argentina.

del Pino N, Oubiña JR, Rodríguez-Frías F, Esteban JI, Buti M, Otero T, Gregori J, García-Cehic D, Camos S, Cubero M, Casillas R, Guàrdia J, Esteban R, Quer J.

World J Gastroenterol. 2013 Sep 21;19(35):5813-27. doi: 10.3748/wjg.v19.i35.5813.

5.

Phylodynamics of hepatitis C virus subtype 2c in the province of Córdoba, Argentina.

Ré VE, Culasso AC, Mengarelli S, Farías AA, Fay F, Pisano MB, Elbarcha O, Contigiani MS, Campos RH.

PLoS One. 2011;6(5):e19471. doi: 10.1371/journal.pone.0019471. Epub 2011 May 18.

6.

Epidemic history of major genotypes of hepatitis C virus in Uruguay.

Castells M, Bello G, Ifrán S, Pereyra S, Boschi S, Uriarte R, Cristina J, Colina R.

Infect Genet Evol. 2015 Jun;32:231-8. doi: 10.1016/j.meegid.2015.03.021. Epub 2015 Mar 20.

PMID:
25801607
7.

Phylodynamics of infectious disease epidemics.

Volz EM, Kosakovsky Pond SL, Ward MJ, Leigh Brown AJ, Frost SD.

Genetics. 2009 Dec;183(4):1421-30. doi: 10.1534/genetics.109.106021. Epub 2009 Sep 21.

8.

The Epidemic Dynamics of Four Major Lineages of HIV-1 CRF01_AE Strains After Their Introduction into China.

Zeng H, Li T, Wang Y, Sun B, Yang R.

AIDS Res Hum Retroviruses. 2016 May;32(5):420-6. doi: 10.1089/AID.2015.0212. Epub 2016 Mar 16.

PMID:
26830205
9.

Molecular characterization of hepatitis C virus genotype 4 sequences in HIV-coinfected patients from Argentina.

Bolcic F, Jones LR, Laufer N, Quarleri J.

J Med Virol. 2011 Jun;83(6):935-40. doi: 10.1002/jmv.22068.

PMID:
21503903
10.

Evolutionary analysis of hepatitis C virus gene sequences from 1953.

Gray RR, Tanaka Y, Takebe Y, Magiorkinis G, Buskell Z, Seeff L, Alter HJ, Pybus OG.

Philos Trans R Soc Lond B Biol Sci. 2013 Aug 12;368(1626):20130168. doi: 10.1098/rstb.2013.0168. Print 2013 Sep 19.

11.

Phylodynamics of HIV-1 circulating recombinant forms 12_BF and 38_BF in Argentina and Uruguay.

Bello G, Aulicino PC, Ruchansky D, Guimarães ML, Lopez-Galindez C, Casado C, Chiparelli H, Rocco C, Mangano A, Sen L, Morgado MG.

Retrovirology. 2010 Mar 22;7:22. doi: 10.1186/1742-4690-7-22.

12.

Epidemic history of hepatitis C virus infection in two remote communities in Nigeria, West Africa.

Forbi JC, Purdy MA, Campo DS, Vaughan G, Dimitrova ZE, Ganova-Raeva LM, Xia GL, Khudyakov YE.

J Gen Virol. 2012 Jul;93(Pt 7):1410-21. doi: 10.1099/vir.0.042184-0. Epub 2012 Mar 28.

13.

Evolutionary history of hepatitis C virus genotype 5a in France, a multicenter ANRS study.

Henquell C, Guglielmini J, Verbeeck J, Mahul A, Thibault V, Lebray P, Laperche S, Trimoulet P, Foucher J, Le Guillou-Guillemette H, Fouchard-Hubert I, Legrand-Abravanel F, Métivier S, Gaudy C, D'Alteroche L, Rosenberg AR, Podevin P, Plantier JC, Riachi G, Saoudin H, Coppere H, André E, Gournay J, Feray C, Vallet S, Nousbaum JB, Baazia Y, Roulot D, Alain S, Loustaud-Ratti V, Schvoerer E, Habersetzer F, Pérez-Serra RJ, Gourari S, Mirand A, Odent-Malaure H, Garraud O, Izopet J, Bommelaer G, Peigue-Lafeuille H, van Ranst M, Abergel A, Bailly JL.

Infect Genet Evol. 2011 Mar;11(2):496-503. doi: 10.1016/j.meegid.2010.12.015. Epub 2011 Jan 18.

PMID:
21251997
14.

Molecular phylodynamics of the heterosexual HIV epidemic in the United Kingdom.

Hughes GJ, Fearnhill E, Dunn D, Lycett SJ, Rambaut A, Leigh Brown AJ; UK HIV Drug Resistance Collaboration..

PLoS Pathog. 2009 Sep;5(9):e1000590. doi: 10.1371/journal.ppat.1000590. Epub 2009 Sep 25.

15.

The HIV-1 subtype C epidemic in South America is linked to the United Kingdom.

de Oliveira T, Pillay D, Gifford RJ; UK Collaborative Group on HIV Drug Resistance..

PLoS One. 2010 Feb 19;5(2):e9311. doi: 10.1371/journal.pone.0009311.

16.

Reconstruction of the evolutionary dynamics of the hepatitis C virus 1b epidemic in Turkey.

Ciccozzi M, Ciccaglione AR, Lo Presti A, Yalcinkaya T, Taskan ZP, Equestre M, Costantino A, Bruni R, Ebranati E, Salemi M, Gray R, Rezza G, Galli M, Zehender G.

Infect Genet Evol. 2011 Jul;11(5):863-8. doi: 10.1016/j.meegid.2011.02.006. Epub 2011 Feb 13.

PMID:
21324382
17.

Molecular survey of hepatitis C virus in the touristic city of Mar del Plata, Argentina.

Culasso AC, Elizalde M, Campos RH, Barbini L.

PLoS One. 2012;7(9):e44757. doi: 10.1371/journal.pone.0044757. Epub 2012 Sep 24.

18.

Reconstruction of the evolutionary dynamics of hepatitis C virus subtypes in Montenegro and the Balkan region.

Zehender G, Sorrentino C, Lai A, Ebranati E, Gabanelli E, Lo Presti A, Vujoševic D, Lauševic D, Terzić D, Shkjezi R, Bino S, Vratnica Z, Mugosa B, Galli M, Ciccozzi M.

Infect Genet Evol. 2013 Jul;17:223-30. doi: 10.1016/j.meegid.2013.04.003. Epub 2013 Apr 18.

PMID:
23603418
19.

Identification of Indian sub-continent as hotspot for HCV genotype 3a origin by Bayesian evolutionary reconstruction.

Choudhary MC, Natarajan V, Pandey P, Gupta E, Sharma S, Tripathi R, Kumar MS, Kazim SN, Sarin SK.

Infect Genet Evol. 2014 Dec;28:87-94. doi: 10.1016/j.meegid.2014.09.009. Epub 2014 Sep 16.

PMID:
25224661
20.

Hepatitis C virus genotype 4d in Southern Italy: reconstruction of its origin and spread by a phylodynamic analysis.

Ciccozzi M, Equestre M, Costantino A, Marascio N, Quirino A, Lo Presti A, Cella E, Bruni R, Liberto MC, Focà A, Pisani G, Zehender G, Ciccaglione AR.

J Med Virol. 2012 Oct;84(10):1613-9. doi: 10.1002/jmv.23384.

PMID:
22930510

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