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Items: 1 to 20 of 86

1.

Alternative polyadenylation diversifies post-transcriptional regulation by selective RNA-protein interactions.

Gupta I, Clauder-Münster S, Klaus B, Järvelin AI, Aiyar RS, Benes V, Wilkening S, Huber W, Pelechano V, Steinmetz LM.

Mol Syst Biol. 2014 Feb 25;10:719. doi: 10.1002/msb.135068. Print 2014.

2.

Involvement of Pta1, Pcf11 and a KlCYC1 AU-rich element in alternative RNA 3'-end processing selection in yeast.

Seoane S, Lamas-Maceiras M, Rodríguez-Torres AM, Freire-Picos MA.

FEBS Lett. 2009 Sep 3;583(17):2843-8. doi: 10.1016/j.febslet.2009.07.042. Epub 2009 Jul 30.

3.

DNA damage induces targeted, genome-wide variation of poly(A) sites in budding yeast.

Graber JH, Nazeer FI, Yeh PC, Kuehner JN, Borikar S, Hoskinson D, Moore CL.

Genome Res. 2013 Oct;23(10):1690-703. doi: 10.1101/gr.144964.112. Epub 2013 Jun 20.

4.

Implications of polyadenylation in health and disease.

Curinha A, Oliveira Braz S, Pereira-Castro I, Cruz A, Moreira A.

Nucleus. 2014;5(6):508-19. doi: 10.4161/nucl.36360. Epub 2014 Oct 31. Review.

5.

The Nrd1-like protein Seb1 coordinates cotranscriptional 3' end processing and polyadenylation site selection.

Lemay JF, Marguerat S, Larochelle M, Liu X, van Nues R, Hunyadkürti J, Hoque M, Tian B, Granneman S, Bähler J, Bachand F.

Genes Dev. 2016 Jul 1;30(13):1558-72. doi: 10.1101/gad.280222.116.

6.

The nuclear exosome contributes to autogenous control of NAB2 mRNA levels.

Roth KM, Wolf MK, Rossi M, Butler JS.

Mol Cell Biol. 2005 Mar;25(5):1577-85.

7.

An efficient method for genome-wide polyadenylation site mapping and RNA quantification.

Wilkening S, Pelechano V, Järvelin AI, Tekkedil MM, Anders S, Benes V, Steinmetz LM.

Nucleic Acids Res. 2013 Mar 1;41(5):e65. doi: 10.1093/nar/gks1249. Epub 2013 Jan 7. Erratum in: Nucleic Acids Res. 2013 Jul;41(12):6370.

8.

Identification of cis elements directing termination of yeast nonpolyadenylated snoRNA transcripts.

Carroll KL, Pradhan DA, Granek JA, Clarke ND, Corden JL.

Mol Cell Biol. 2004 Jul;24(14):6241-52.

9.

Extensive transcriptional heterogeneity revealed by isoform profiling.

Pelechano V, Wei W, Steinmetz LM.

Nature. 2013 May 2;497(7447):127-31. doi: 10.1038/nature12121. Epub 2013 Apr 24.

10.

The elongation factor eEF3 (Yef3) interacts with mRNA in a translation independent manner.

Samra N, Atir-Lande A, Pnueli L, Arava Y.

BMC Mol Biol. 2015 Sep 24;16:17. doi: 10.1186/s12867-015-0045-5.

11.

Loss of MBNL leads to disruption of developmentally regulated alternative polyadenylation in RNA-mediated disease.

Batra R, Charizanis K, Manchanda M, Mohan A, Li M, Finn DJ, Goodwin M, Zhang C, Sobczak K, Thornton CA, Swanson MS.

Mol Cell. 2014 Oct 23;56(2):311-22. doi: 10.1016/j.molcel.2014.08.027. Epub 2014 Sep 25.

12.

Two yeast PUF proteins negatively regulate a single mRNA.

Hook BA, Goldstrohm AC, Seay DJ, Wickens M.

J Biol Chem. 2007 May 25;282(21):15430-8. Epub 2007 Mar 27.

13.

Yeast Edc3 targets RPS28B mRNA for decapping by binding to a 3' untranslated region decay-inducing regulatory element.

He F, Li C, Roy B, Jacobson A.

Mol Cell Biol. 2014 Apr;34(8):1438-51. doi: 10.1128/MCB.01584-13. Epub 2014 Feb 3.

14.

The mRNA encoding the yeast ARE-binding protein Cth2 is generated by a novel 3' processing pathway.

Ciais D, Bohnsack MT, Tollervey D.

Nucleic Acids Res. 2008 May;36(9):3075-84. doi: 10.1093/nar/gkn160. Epub 2008 Apr 8.

15.

Translating the Untranslated Region.

Schwerk J, Savan R.

J Immunol. 2015 Oct 1;195(7):2963-71. doi: 10.4049/jimmunol.1500756. Review.

16.

Recruitment of the Puf3 protein to its mRNA target for regulation of mRNA decay in yeast.

Jackson JS Jr, Houshmandi SS, Lopez Leban F, Olivas WM.

RNA. 2004 Oct;10(10):1625-36. Epub 2004 Aug 30.

17.

Puf1p acts in combination with other yeast Puf proteins to control mRNA stability.

Ulbricht RJ, Olivas WM.

RNA. 2008 Feb;14(2):246-62. Epub 2007 Dec 19.

18.

Comparison of the yeast and human nuclear exosome complexes.

Sloan KE, Schneider C, Watkins NJ.

Biochem Soc Trans. 2012 Aug;40(4):850-5. doi: 10.1042/BST20120061. Review.

PMID:
22817747
19.

Autoregulation of Npl3, a yeast SR protein, requires a novel downstream region and serine phosphorylation.

Lund MK, Kress TL, Guthrie C.

Mol Cell Biol. 2008 Jun;28(11):3873-81. doi: 10.1128/MCB.02153-07. Epub 2008 Apr 7.

20.

A comprehensive analysis of 3' end sequencing data sets reveals novel polyadenylation signals and the repressive role of heterogeneous ribonucleoprotein C on cleavage and polyadenylation.

Gruber AJ, Schmidt R, Gruber AR, Martin G, Ghosh S, Belmadani M, Keller W, Zavolan M.

Genome Res. 2016 Aug;26(8):1145-59. doi: 10.1101/gr.202432.115. Epub 2016 Jul 5.

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