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Items: 1 to 20 of 328

1.

Strand-specific RNA-Seq reveals widespread and developmentally regulated transcription of natural antisense transcripts in Plasmodium falciparum.

Siegel TN, Hon CC, Zhang Q, Lopez-Rubio JJ, Scheidig-Benatar C, Martins RM, Sismeiro O, Coppée JY, Scherf A.

BMC Genomics. 2014 Feb 22;15:150. doi: 10.1186/1471-2164-15-150.

2.

Natural antisense transcripts in Plasmodium falciparum isolates from patients with complicated malaria.

Subudhi AK, Boopathi PA, Garg S, Middha S, Acharya J, Pakalapati D, Saxena V, Aiyaz M, Orekondy HB, Mugasimangalam RC, Sirohi P, Kochar SK, Kochar DK, Das A.

Exp Parasitol. 2014 Jun;141:39-54. doi: 10.1016/j.exppara.2014.03.008. Epub 2014 Mar 20.

PMID:
24657575
3.

Strand-specific RNA-seq reveals widespread occurrence of novel cis-natural antisense transcripts in rice.

Lu T, Zhu C, Lu G, Guo Y, Zhou Y, Zhang Z, Zhao Y, Li W, Lu Y, Tang W, Feng Q, Han B.

BMC Genomics. 2012 Dec 22;13:721. doi: 10.1186/1471-2164-13-721.

4.

Strand-specific RNA sequencing in Plasmodium falciparum malaria identifies developmentally regulated long non-coding RNA and circular RNA.

Broadbent KM, Broadbent JC, Ribacke U, Wirth D, Rinn JL, Sabeti PC.

BMC Genomics. 2015 Jun 13;16:454. doi: 10.1186/s12864-015-1603-4.

5.

Revealing natural antisense transcripts from Plasmodium vivax isolates: evidence of genome regulation in complicated malaria.

Boopathi PA, Subudhi AK, Garg S, Middha S, Acharya J, Pakalapati D, Saxena V, Aiyaz M, Chand B, Mugasimangalam RC, Kochar SK, Sirohi P, Kochar DK, Das A.

Infect Genet Evol. 2013 Dec;20:428-43. doi: 10.1016/j.meegid.2013.09.026. Epub 2013 Oct 11.

PMID:
24121022
6.

Integrated detection of natural antisense transcripts using strand-specific RNA sequencing data.

Li S, Liberman LM, Mukherjee N, Benfey PN, Ohler U.

Genome Res. 2013 Oct;23(10):1730-9. doi: 10.1101/gr.149310.112. Epub 2013 Jul 1.

7.

Widespread distribution of antisense transcripts in the Plasmodium falciparum genome.

Gunasekera AM, Patankar S, Schug J, Eisen G, Kissinger J, Roos D, Wirth DF.

Mol Biochem Parasitol. 2004 Jul;136(1):35-42.

PMID:
15138065
8.

Small RNAs and the regulation of cis-natural antisense transcripts in Arabidopsis.

Jin H, Vacic V, Girke T, Lonardi S, Zhu JK.

BMC Mol Biol. 2008 Jan 14;9:6. doi: 10.1186/1471-2199-9-6.

9.

Polysome profiling reveals translational control of gene expression in the human malaria parasite Plasmodium falciparum.

Bunnik EM, Chung DW, Hamilton M, Ponts N, Saraf A, Prudhomme J, Florens L, Le Roch KG.

Genome Biol. 2013 Nov 22;14(11):R128. doi: 10.1186/gb-2013-14-11-r128.

10.

Genome-wide analysis in Plasmodium falciparum reveals early and late phases of RNA polymerase II occupancy during the infectious cycle.

Rai R, Zhu L, Chen H, Gupta AP, Sze SK, Zheng J, Ruedl C, Bozdech Z, Featherstone M.

BMC Genomics. 2014 Nov 6;15:959. doi: 10.1186/1471-2164-15-959.

11.

Natural antisense transcripts and long non-coding RNA in Neurospora crassa.

Arthanari Y, Heintzen C, Griffiths-Jones S, Crosthwaite SK.

PLoS One. 2014 Mar 12;9(3):e91353. doi: 10.1371/journal.pone.0091353. eCollection 2014.

12.

Large-scale analysis of antisense transcription in wheat using the Affymetrix GeneChip Wheat Genome Array.

Coram TE, Settles ML, Chen X.

BMC Genomics. 2009 May 29;10:253. doi: 10.1186/1471-2164-10-253.

13.

Prediction of trans-antisense transcripts in Arabidopsis thaliana.

Wang H, Chua NH, Wang XJ.

Genome Biol. 2006;7(10):R92. Epub 2006 Oct 13.

14.

New insights into the blood-stage transcriptome of Plasmodium falciparum using RNA-Seq.

Otto TD, Wilinski D, Assefa S, Keane TM, Sarry LR, Böhme U, Lemieux J, Barrell B, Pain A, Berriman M, Newbold C, Llinás M.

Mol Microbiol. 2010 Apr;76(1):12-24. doi: 10.1111/j.1365-2958.2009.07026.x. Epub 2010 Feb 4.

15.
16.

Deep profiling of the novel intermediate-size noncoding RNAs in intraerythrocytic Plasmodium falciparum.

Wei C, Xiao T, Zhang P, Wang Z, Chen X, Zhang L, Yao M, Chen R, Wang H.

PLoS One. 2014 Apr 8;9(4):e92946. doi: 10.1371/journal.pone.0092946. eCollection 2014.

17.

Genome-wide identification and analysis of small RNAs originated from natural antisense transcripts in Oryza sativa.

Zhou X, Sunkar R, Jin H, Zhu JK, Zhang W.

Genome Res. 2009 Jan;19(1):70-8. doi: 10.1101/gr.084806.108. Epub 2008 Oct 29.

18.

The landscape of antisense gene expression in human cancers.

Balbin OA, Malik R, Dhanasekaran SM, Prensner JR, Cao X, Wu YM, Robinson D, Wang R, Chen G, Beer DG, Nesvizhskii AI, Chinnaiyan AM.

Genome Res. 2015 Jul;25(7):1068-79. doi: 10.1101/gr.180596.114. Epub 2015 Jun 10.

19.

Sense and antisense transcripts of convergent gene pairs in Arabidopsis thaliana can share a common polyadenylation region.

Zubko E, Kunova A, Meyer P.

PLoS One. 2011 Feb 2;6(2):e16769. doi: 10.1371/journal.pone.0016769.

20.
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