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Items: 1 to 20 of 96

1.

Sequence profiling of the Saccharomyces cerevisiae genome permits deconvolution of unique and multialigned reads for variant detection.

Jubin C, Serero A, Loeillet S, Barillot E, Nicolas A.

G3 (Bethesda). 2014 Apr 16;4(4):707-15. doi: 10.1534/g3.113.009464.

2.

The Saccharomyces Genome Database Variant Viewer.

Sheppard TK, Hitz BC, Engel SR, Song G, Balakrishnan R, Binkley G, Costanzo MC, Dalusag KS, Demeter J, Hellerstedt ST, Karra K, Nash RS, Paskov KM, Skrzypek MS, Weng S, Wong ED, Cherry JM.

Nucleic Acids Res. 2016 Jan 4;44(D1):D698-702. doi: 10.1093/nar/gkv1250. Epub 2015 Nov 17.

3.
4.

Whole genome sequencing of Saccharomyces cerevisiae: from genotype to phenotype for improved metabolic engineering applications.

Otero JM, Vongsangnak W, Asadollahi MA, Olivares-Hernandes R, Maury J, Farinelli L, Barlocher L, Osterås M, Schalk M, Clark A, Nielsen J.

BMC Genomics. 2010 Dec 22;11:723. doi: 10.1186/1471-2164-11-723.

5.

Detection of heterozygous mutations in the genome of mismatch repair defective diploid yeast using a Bayesian approach.

Zanders S, Ma X, Roychoudhury A, Hernandez RD, Demogines A, Barker B, Gu Z, Bustamante CD, Alani E.

Genetics. 2010 Oct;186(2):493-503. doi: 10.1534/genetics.110.120105. Epub 2010 Jul 26.

6.

From one to many: expanding the Saccharomyces cerevisiae reference genome panel.

Engel SR, Weng S, Binkley G, Paskov K, Song G, Cherry JM.

Database (Oxford). 2016 Mar 17;2016. pii: baw020. doi: 10.1093/database/baw020. Print 2016.

7.

Genome Snapshot: a new resource at the Saccharomyces Genome Database (SGD) presenting an overview of the Saccharomyces cerevisiae genome.

Hirschman JE, Balakrishnan R, Christie KR, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hong EL, Livstone MS, Nash R, Park J, Oughtred R, Skrzypek M, Starr B, Theesfeld CL, Williams J, Andrada R, Binkley G, Dong Q, Lane C, Miyasato S, Sethuraman A, Schroeder M, Thanawala MK, Weng S, Dolinski K, Botstein D, Cherry JM.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D442-5.

9.

Saccharomyces Genome Database: the genomics resource of budding yeast.

Cherry JM, Hong EL, Amundsen C, Balakrishnan R, Binkley G, Chan ET, Christie KR, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hirschman JE, Hitz BC, Karra K, Krieger CJ, Miyasato SR, Nash RS, Park J, Skrzypek MS, Simison M, Weng S, Wong ED.

Nucleic Acids Res. 2012 Jan;40(Database issue):D700-5. doi: 10.1093/nar/gkr1029. Epub 2011 Nov 21.

10.

Considerations for creating and annotating the budding yeast Genome Map at SGD: a progress report.

Chan ET, Cherry JM.

Database (Oxford). 2012 Mar 20;2012:bar057. doi: 10.1093/database/bar057. Print 2012.

11.
12.

The reference genome sequence of Saccharomyces cerevisiae: then and now.

Engel SR, Dietrich FS, Fisk DG, Binkley G, Balakrishnan R, Costanzo MC, Dwight SS, Hitz BC, Karra K, Nash RS, Weng S, Wong ED, Lloyd P, Skrzypek MS, Miyasato SR, Simison M, Cherry JM.

G3 (Bethesda). 2014 Mar 20;4(3):389-98. doi: 10.1534/g3.113.008995.

14.

Integration of new alternative reference strain genome sequences into the Saccharomyces genome database.

Song G, Balakrishnan R, Binkley G, Costanzo MC, Dalusag K, Demeter J, Engel S, Hellerstedt ST, Karra K, Hitz BC, Nash RS, Paskov K, Sheppard T, Skrzypek M, Weng S, Wong E, Michael Cherry J.

Database (Oxford). 2016 Jun 1;2016. pii: baw074. doi: 10.1093/database/baw074. Print 2016.

15.

Comparative genome analysis of a Saccharomyces cerevisiae wine strain.

Borneman AR, Forgan AH, Pretorius IS, Chambers PJ.

FEMS Yeast Res. 2008 Nov;8(7):1185-95. doi: 10.1111/j.1567-1364.2008.00434.x. Epub 2008 Sep 4.

16.

Efficient yeast ChIP-Seq using multiplex short-read DNA sequencing.

Lefrançois P, Euskirchen GM, Auerbach RK, Rozowsky J, Gibson T, Yellman CM, Gerstein M, Snyder M.

BMC Genomics. 2009 Jan 21;10:37. doi: 10.1186/1471-2164-10-37.

17.

Fungal BLAST and Model Organism BLASTP Best Hits: new comparison resources at the Saccharomyces Genome Database (SGD).

Balakrishnan R, Christie KR, Costanzo MC, Dolinski K, Dwight SS, Engel SR, Fisk DG, Hirschman JE, Hong EL, Nash R, Oughtred R, Skrzypek M, Theesfeld CL, Binkley G, Dong Q, Lane C, Sethuraman A, Weng S, Botstein D, Cherry JM.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D374-7.

18.

Evolutionary genomics of transposable elements in Saccharomyces cerevisiae.

Carr M, Bensasson D, Bergman CM.

PLoS One. 2012;7(11):e50978. doi: 10.1371/journal.pone.0050978. Epub 2012 Nov 30.

19.

Genome sequence of Saccharomyces carlsbergensis, the world's first pure culture lager yeast.

Walther A, Hesselbart A, Wendland J.

G3 (Bethesda). 2014 Feb 27;4(5):783-93. doi: 10.1534/g3.113.010090.

20.

Transcriptome analysis of Capsicum annuum varieties Mandarin and Blackcluster: assembly, annotation and molecular marker discovery.

Ahn YK, Tripathi S, Kim JH, Cho YI, Lee HE, Kim DS, Woo JG, Cho MC.

Gene. 2014 Jan 10;533(2):494-9. doi: 10.1016/j.gene.2013.09.095. Epub 2013 Oct 11.

PMID:
24125952

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