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Items: 1 to 20 of 107

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Ab initio and template-based prediction of multi-class distance maps by two-dimensional recursive neural networks.

Walsh I, BaĆ¹ D, Martin AJ, Mooney C, Vullo A, Pollastri G.

BMC Struct Biol. 2009 Jan 30;9:5. doi: 10.1186/1472-6807-9-5.

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A two-stage approach for improved prediction of residue contact maps.

Vullo A, Walsh I, Pollastri G.

BMC Bioinformatics. 2006 Mar 30;7:180.

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Strand-loop-strand motifs: prediction of hairpins and diverging turns in proteins.

Kuhn M, Meiler J, Baker D.

Proteins. 2004 Feb 1;54(2):282-8.

PMID:
14696190
7.

Predicting alpha-helix and beta-strand segments of globular proteins.

Solovyev VV, Salamov AA.

Comput Appl Biosci. 1994 Dec;10(6):661-9.

PMID:
7704665
8.

Prediction of protein structural classes for low-homology sequences based on predicted secondary structure.

Yang JY, Peng ZL, Chen X.

BMC Bioinformatics. 2010 Jan 18;11 Suppl 1:S9. doi: 10.1186/1471-2105-11-S1-S9.

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10.

Assessment of CASP8 structure predictions for template free targets.

Ben-David M, Noivirt-Brik O, Paz A, Prilusky J, Sussman JL, Levy Y.

Proteins. 2009;77 Suppl 9:50-65. doi: 10.1002/prot.22591.

PMID:
19774550
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PCI-SS: MISO dynamic nonlinear protein secondary structure prediction.

Green JR, Korenberg MJ, Aboul-Magd MO.

BMC Bioinformatics. 2009 Jul 17;10:222. doi: 10.1186/1471-2105-10-222.

14.

Principles, challenges and advances in ab initio protein structure prediction.

Jothi A.

Protein Pept Lett. 2012 Nov;19(11):1194-204.

PMID:
22587787
15.

FREAD revisited: Accurate loop structure prediction using a database search algorithm.

Choi Y, Deane CM.

Proteins. 2010 May 1;78(6):1431-40. doi: 10.1002/prot.22658.

PMID:
20034110
16.

Effective inter-residue contact definitions for accurate protein fold recognition.

Yuan C, Chen H, Kihara D.

BMC Bioinformatics. 2012 Nov 9;13:292. doi: 10.1186/1471-2105-13-292.

17.

Protein contact order prediction from primary sequences.

Shi Y, Zhou J, Arndt D, Wishart DS, Lin G.

BMC Bioinformatics. 2008 May 30;9:255. doi: 10.1186/1471-2105-9-255.

18.

CNNcon: improved protein contact maps prediction using cascaded neural networks.

Ding W, Xie J, Dai D, Zhang H, Xie H, Zhang W.

PLoS One. 2013 Apr 23;8(4):e61533. doi: 10.1371/journal.pone.0061533.

19.

Contact order and ab initio protein structure prediction.

Bonneau R, Ruczinski I, Tsai J, Baker D.

Protein Sci. 2002 Aug;11(8):1937-44.

20.

Benchmarking of TASSER in the ab initio limit.

Borreguero JM, Skolnick J.

Proteins. 2007 Jul 1;68(1):48-56.

PMID:
17444524
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