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Prediction and biochemical demonstration of a catabolic pathway for the osmoprotectant proline betaine.

Kumar R, Zhao S, Vetting MW, Wood BM, Sakai A, Cho K, Solbiati J, Almo SC, Sweedler JV, Jacobson MP, Gerlt JA, Cronan JE.

MBio. 2014 Feb 11;5(1):e00933-13. doi: 10.1128/mBio.00933-13.


Inducible-expression plasmid for Rhodobacter sphaeroides and Paracoccus denitrificans.

Ind AC, Porter SL, Brown MT, Byles ED, de Beyer JA, Godfrey SA, Armitage JP.

Appl Environ Microbiol. 2009 Oct;75(20):6613-5. doi: 10.1128/AEM.01587-09. Epub 2009 Aug 14.


L-Hydroxyproline and d-Proline Catabolism in Sinorhizobium meliloti.

Chen S, White CE, diCenzo GC, Zhang Y, Stogios PJ, Savchenko A, Finan TM.

J Bacteriol. 2016 Feb 1;198(7):1171-81. doi: 10.1128/JB.00961-15.


Role of trehalose synthesis pathways in salt tolerance mechanism of Rhodobacter sphaeroides f. sp. denitrificans IL106.

Makihara F, Tsuzuki M, Sato K, Masuda S, Nagashima KV, Abo M, Okubo A.

Arch Microbiol. 2005 Oct;184(1):56-65. Epub 2005 Nov 3.


Proline betaine is a highly effective osmoprotectant for Staphylococcus aureus.

Amin US, Lash TD, Wilkinson BJ.

Arch Microbiol. 1995 Feb;163(2):138-42.


Discovery of new enzymes and metabolic pathways by using structure and genome context.

Zhao S, Kumar R, Sakai A, Vetting MW, Wood BM, Brown S, Bonanno JB, Hillerich BS, Seidel RD, Babbitt PC, Almo SC, Sweedler JV, Gerlt JA, Cronan JE, Jacobson MP.

Nature. 2013 Oct 31;502(7473):698-702. doi: 10.1038/nature12576. Epub 2013 Sep 22.


Plant-derived compatible solutes proline betaine and betonicine confer enhanced osmotic and temperature stress tolerance to Bacillus subtilis.

Bashir A, Hoffmann T, Kempf B, Xie X, Smits SH, Bremer E.

Microbiology. 2014 Oct;160(Pt 10):2283-94. doi: 10.1099/mic.0.079665-0. Epub 2014 Jul 10.


Trehalose as osmoprotectant in Rhodobacter sphaeroides f. sp. denitrificans IL106.

Xu X, Abo M, Okubo A, Yamazaki S.

Biosci Biotechnol Biochem. 1998 Feb;62(2):334-7.


Salmonella typhimurium proP gene encodes a transport system for the osmoprotectant betaine.

Cairney J, Booth IR, Higgins CF.

J Bacteriol. 1985 Dec;164(3):1218-23.


Osmoregulation in Rhodobacter sphaeroides.

Abee T, Palmen R, Hellingwerf KJ, Konings WN.

J Bacteriol. 1990 Jan;172(1):149-54.


Characterization of an NaCl-sensitive Staphylococcus aureus mutant and rescue of the NaCl-sensitive phenotype by glycine betaine but not by other compatible solutes.

Vijaranakul U, Nadakavukaren MJ, Bayles DO, Wilkinson BJ, Jayaswal RK.

Appl Environ Microbiol. 1997 May;63(5):1889-97.


The AppA and PpsR proteins from Rhodobacter sphaeroides can establish a redox-dependent signal chain but fail to transmit blue-light signals in other bacteria.

Jäger A, Braatsch S, Haberzettl K, Metz S, Osterloh L, Han Y, Klug G.

J Bacteriol. 2007 Mar;189(6):2274-82. Epub 2007 Jan 5.


Salt stress-induced changes in the transcriptome, compatible solutes, and membrane lipids in the facultatively phototrophic bacterium Rhodobacter sphaeroides.

Tsuzuki M, Moskvin OV, Kuribayashi M, Sato K, Retamal S, Abo M, Zeilstra-Ryalls J, Gomelsky M.

Appl Environ Microbiol. 2011 Nov;77(21):7551-9. doi: 10.1128/AEM.05463-11. Epub 2011 Sep 9.


Heterologous expression of correctly assembled methylamine dehydrogenase in Rhodobacter sphaeroides.

Graichen ME, Jones LH, Sharma BV, van Spanning RJ, Hosler JP, Davidson VL.

J Bacteriol. 1999 Jul;181(14):4216-22.


Protection of Bacillus subtilis against cold stress via compatible-solute acquisition.

Hoffmann T, Bremer E.

J Bacteriol. 2011 Apr;193(7):1552-62. doi: 10.1128/JB.01319-10. Epub 2011 Feb 4.


Prediction and characterization of enzymatic activities guided by sequence similarity and genome neighborhood networks.

Zhao S, Sakai A, Zhang X, Vetting MW, Kumar R, Hillerich B, San Francisco B, Solbiati J, Steves A, Brown S, Akiva E, Barber A, Seidel RD, Babbitt PC, Almo SC, Gerlt JA, Jacobson MP.

Elife. 2014 Jun 30;3. doi: 10.7554/eLife.03275.


Pathways involved in reductant distribution during photobiological H(2) production by Rhodobacter sphaeroides.

Kontur WS, Ziegelhoffer EC, Spero MA, Imam S, Noguera DR, Donohue TJ.

Appl Environ Microbiol. 2011 Oct;77(20):7425-9. doi: 10.1128/AEM.05273-11. Epub 2011 Aug 19.


Determination of the Paracoccus denitrificans SOS box.

del Rey A, Diestra J, Fernández de Henestrosa AR, Barbé J.

Microbiology. 1999 Mar;145 ( Pt 3):577-84.


Identification of a human trans-3-hydroxy-L-proline dehydratase, the first characterized member of a novel family of proline racemase-like enzymes.

Visser WF, Verhoeven-Duif NM, de Koning TJ.

J Biol Chem. 2012 Jun 22;287(26):21654-62. doi: 10.1074/jbc.M112.363218. Epub 2012 Apr 23.

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