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Items: 1 to 20 of 124

1.

ChildSeq-RNA: A next-generation sequencing-based diagnostic assay to identify known fusion transcripts in childhood sarcomas.

Qadir MA, Zhan SH, Kwok B, Bruestle J, Drees B, Popescu OE, Sorensen PH.

J Mol Diagn. 2014 May;16(3):361-70. doi: 10.1016/j.jmoldx.2014.01.002. Epub 2014 Feb 8.

PMID:
24517889
2.

Detection of fusion gene transcripts in fresh-frozen and formalin-fixed paraffin-embedded tissue sections of soft-tissue sarcomas after laser capture microdissection and rt-PCR.

Jin L, Majerus J, Oliveira A, Inwards CY, Nascimento AG, Burgart LJ, Lloyd RV.

Diagn Mol Pathol. 2003 Dec;12(4):224-30.

PMID:
14639108
3.

Use of reverse transcriptase polymerase chain reaction for diagnosis and staging of alveolar rhabdomyosarcoma, Ewing sarcoma family of tumors, and desmoplastic small round cell tumor.

Athale UH, Shurtleff SA, Jenkins JJ, Poquette CA, Tan M, Downing JR, Pappo AS.

J Pediatr Hematol Oncol. 2001 Feb;23(2):99-104.

PMID:
11216714
4.

Distinct transcriptional signature and immunoprofile of CIC-DUX4 fusion-positive round cell tumors compared to EWSR1-rearranged Ewing sarcomas: further evidence toward distinct pathologic entities.

Specht K, Sung YS, Zhang L, Richter GH, Fletcher CD, Antonescu CR.

Genes Chromosomes Cancer. 2014 Jul;53(7):622-33. doi: 10.1002/gcc.22172. Epub 2014 Apr 10.

5.

Investigation of IGF2, Hedgehog and fusion gene expression profiles in pediatric sarcomas.

de Souza RR, Oliveira ID, del Giúdice Paniago M, Yaoita FH, Caran EM, Macedo CR, Petrilli AS, Abib Sde C, de Seixas Alves MT, de Toledo SR.

Growth Horm IGF Res. 2014 Aug;24(4):130-6. doi: 10.1016/j.ghir.2014.04.002. Epub 2014 Apr 16.

PMID:
24846856
6.

The NAB2-STAT6 gene fusion in solitary fibrous tumor can be reliably detected by anchored multiplexed PCR for targeted next-generation sequencing.

Guseva NV, Tanas MR, Stence AA, Sompallae R, Schade JC, Bossler AD, Bellizzi AM, Ma D.

Cancer Genet. 2016 Jul-Aug;209(7-8):303-12. doi: 10.1016/j.cancergen.2016.05.071. Epub 2016 May 24.

PMID:
27292373
7.

Identification of various exon combinations of the ews/fli1 translocation: an optimized RT-PCR method for paraffin embedded tissue -- a report by the CWS-study group.

Stegmaier S, Leuschner I, Aakcha-Rudel E, Münch P, Kazanowska B, Bekassy A, Treuner J, Koscielniak E.

Klin Padiatr. 2004 Nov-Dec;216(6):315-22.

PMID:
15565546
8.

RNA sequencing of sarcomas with simple karyotypes: identification and enrichment of fusion transcripts.

Hofvander J, Tayebwa J, Nilsson J, Magnusson L, Brosjö O, Larsson O, von Steyern FV, Domanski HA, Mandahl N, Mertens F.

Lab Invest. 2015 Jun;95(6):603-9. doi: 10.1038/labinvest.2015.50. Epub 2015 Apr 13.

9.

deFuse: an algorithm for gene fusion discovery in tumor RNA-Seq data.

McPherson A, Hormozdiari F, Zayed A, Giuliany R, Ha G, Sun MG, Griffith M, Heravi Moussavi A, Senz J, Melnyk N, Pacheco M, Marra MA, Hirst M, Nielsen TO, Sahinalp SC, Huntsman D, Shah SP.

PLoS Comput Biol. 2011 May;7(5):e1001138. doi: 10.1371/journal.pcbi.1001138. Epub 2011 May 19.

10.

Performance characteristics of a reverse transcriptase-polymerase chain reaction assay for the detection of tumor-specific fusion transcripts from archival tissue.

Fritsch MK, Bridge JA, Schuster AE, Perlman EJ, Argani P.

Pediatr Dev Pathol. 2003 Jan-Feb;6(1):43-53. Epub 2002 Oct 14.

PMID:
12375129
11.

Detection of common chromosomal translocations in small round blue cell pediatric tumors.

Ponce-Castañeda MV, García-Chéquer AJ, Eguía Aguilar P, Abundes-Ramírez MA, Hernández-Angeles A, Nieto-Martínez K, Gómez-Laguna L, Sadowinski-Pine S, Cabrera-Muñoz Mde L.

Arch Med Res. 2014 Feb;45(2):143-51. doi: 10.1016/j.arcmed.2013.12.009. Epub 2014 Jan 28.

PMID:
24486246
12.

BCOR-CCNB3 fusions are frequent in undifferentiated sarcomas of male children.

Peters TL, Kumar V, Polikepahad S, Lin FY, Sarabia SF, Liang Y, Wang WL, Lazar AJ, Doddapaneni H, Chao H, Muzny DM, Wheeler DA, Okcu MF, Plon SE, Hicks MJ, López-Terrada D, Parsons DW, Roy A.

Mod Pathol. 2015 Apr;28(4):575-86. doi: 10.1038/modpathol.2014.139. Epub 2014 Oct 31.

13.

Molecular detection of the ETV6-NTRK3 gene fusion differentiates congenital fibrosarcoma from other childhood spindle cell tumors.

Bourgeois JM, Knezevich SR, Mathers JA, Sorensen PH.

Am J Surg Pathol. 2000 Jul;24(7):937-46.

PMID:
10895816
14.

A novel EWSR1-CREB3L1 fusion transcript in a case of small cell osteosarcoma.

Debelenko LV, McGregor LM, Shivakumar BR, Dorfman HD, Raimondi SC.

Genes Chromosomes Cancer. 2011 Dec;50(12):1054-62. doi: 10.1002/gcc.20923. Epub 2011 Aug 24.

PMID:
21987447
15.

Identification of gene fusion transcripts by transcriptome sequencing in BRCA1-mutated breast cancers and cell lines.

Ha KC, Lalonde E, Li L, Cavallone L, Natrajan R, Lambros MB, Mitsopoulos C, Hakas J, Kozarewa I, Fenwick K, Lord CJ, Ashworth A, Vincent-Salomon A, Basik M, Reis-Filho JS, Majewski J, Foulkes WD.

BMC Med Genomics. 2011 Oct 27;4:75. doi: 10.1186/1755-8794-4-75.

16.

A novel CIC-FOXO4 gene fusion in undifferentiated small round cell sarcoma: a genetically distinct variant of Ewing-like sarcoma.

Sugita S, Arai Y, Tonooka A, Hama N, Totoki Y, Fujii T, Aoyama T, Asanuma H, Tsukahara T, Kaya M, Shibata T, Hasegawa T.

Am J Surg Pathol. 2014 Nov;38(11):1571-6. doi: 10.1097/PAS.0000000000000286.

PMID:
25007147
17.

Multiple splice variants of EWSR1-ETS fusion transcripts co-existing in the Ewing sarcoma family of tumors.

Patócs B, Németh K, Garami M, Arató G, Kovalszky I, Szendrői M, Fekete G.

Cell Oncol (Dordr). 2013 Jun;36(3):191-200. doi: 10.1007/s13402-013-0126-8. Epub 2013 Mar 14.

PMID:
23494411
19.

Detection of PAX3/PAX7-FKHR fusion transcripts in rhabdomyosarcoma and other small round cell tumors by 1-step reverse transcriptase polymerase chain reaction: a novel tool for diagnosis and differentiation.

Yang XL, Zhang SC, Zhang SW, Wang H.

Ann Diagn Pathol. 2012 Apr;16(2):107-11. doi: 10.1016/j.anndiagpath.2011.09.004. Epub 2011 Dec 24.

PMID:
22197543
20.

Sensitive and specific detection of EML4-ALK rearrangements in non-small cell lung cancer (NSCLC) specimens by multiplex amplicon RNA massive parallel sequencing.

Moskalev EA, Frohnauer J, Merkelbach-Bruse S, Schildhaus HU, Dimmler A, Schubert T, Boltze C, König H, Fuchs F, Sirbu H, Rieker RJ, Agaimy A, Hartmann A, Haller F.

Lung Cancer. 2014 Jun;84(3):215-21. doi: 10.1016/j.lungcan.2014.03.002. Epub 2014 Mar 13.

PMID:
24674157

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