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Items: 1 to 20 of 194

1.

Centromere reference models for human chromosomes X and Y satellite arrays.

Miga KH, Newton Y, Jain M, Altemose N, Willard HF, Kent WJ.

Genome Res. 2014 Apr;24(4):697-707. doi: 10.1101/gr.159624.113. Epub 2014 Feb 5.

2.

Genomic characterization of large heterochromatic gaps in the human genome assembly.

Altemose N, Miga KH, Maggioni M, Willard HF.

PLoS Comput Biol. 2014 May 15;10(5):e1003628. doi: 10.1371/journal.pcbi.1003628. eCollection 2014 May.

3.

Alpha-CENTAURI: assessing novel centromeric repeat sequence variation with long read sequencing.

Sevim V, Bashir A, Chin CS, Miga KH.

Bioinformatics. 2016 Jul 1;32(13):1921-1924. doi: 10.1093/bioinformatics/btw101. Epub 2016 Feb 24.

4.

Satellite DNAs between selfishness and functionality: structure, genomics and evolution of tandem repeats in centromeric (hetero)chromatin.

Plohl M, Luchetti A, Mestrović N, Mantovani B.

Gene. 2008 Feb 15;409(1-2):72-82. doi: 10.1016/j.gene.2007.11.013. Epub 2007 Dec 4. Review.

PMID:
18182173
5.

Global sequence characterization of rice centromeric satellite based on oligomer frequency analysis in large-scale sequencing data.

Macas J, Neumann P, Novák P, Jiang J.

Bioinformatics. 2010 Sep 1;26(17):2101-8. doi: 10.1093/bioinformatics/btq343. Epub 2010 Jul 8.

PMID:
20616383
6.

Repeatless and repeat-based centromeres in potato: implications for centromere evolution.

Gong Z, Wu Y, Koblízková A, Torres GA, Wang K, Iovene M, Neumann P, Zhang W, Novák P, Buell CR, Macas J, Jiang J.

Plant Cell. 2012 Sep;24(9):3559-74. doi: 10.1105/tpc.112.100511. Epub 2012 Sep 11.

7.
8.

The structure of an endogenous Drosophila centromere reveals the prevalence of tandemly repeated sequences able to form i-motifs.

Garavís M, Méndez-Lago M, Gabelica V, Whitehead SL, González C, Villasante A.

Sci Rep. 2015 Aug 20;5:13307. doi: 10.1038/srep13307.

9.

Completing the human genome: the progress and challenge of satellite DNA assembly.

Miga KH.

Chromosome Res. 2015 Sep;23(3):421-6. doi: 10.1007/s10577-015-9488-2. Review.

PMID:
26363799
10.

Structure of DNA near long tandem arrays of alpha satellite DNA at the centromere of human chromosome 7.

Wevrick R, Willard VP, Willard HF.

Genomics. 1992 Dec;14(4):912-23.

PMID:
1478672
11.

Chromosome-specific alpha-satellite DNA from the centromere of chimpanzee chromosome 4.

Haaf T, Willard HF.

Chromosoma. 1997 Sep;106(4):226-32.

PMID:
9254724
12.

Molecular characterization and chromosomal distribution of a species-specific transcribed centromeric satellite repeat from the olive fruit fly, Bactrocera oleae.

Tsoumani KT, Drosopoulou E, Mavragani-Tsipidou P, Mathiopoulos KD.

PLoS One. 2013 Nov 14;8(11):e79393. doi: 10.1371/journal.pone.0079393. eCollection 2013.

13.

Genome-wide characterization of centromeric satellites from multiple mammalian genomes.

Alkan C, Cardone MF, Catacchio CR, Antonacci F, O'Brien SJ, Ryder OA, Purgato S, Zoli M, Della Valle G, Eichler EE, Ventura M.

Genome Res. 2011 Jan;21(1):137-45. doi: 10.1101/gr.111278.110. Epub 2010 Nov 16.

14.

Genomic and genetic definition of a functional human centromere.

Schueler MG, Higgins AW, Rudd MK, Gustashaw K, Willard HF.

Science. 2001 Oct 5;294(5540):109-15.

15.

Direct visualization of the genomic distribution and organization of two cervid centromeric satellite DNA families.

Li YC, Lee C, Hseu TH, Li SY, Lin CC.

Cytogenet Cell Genet. 2000;89(3-4):192-8. Erratum in: Cytogenet Cell Genet 2001;92(1-2):73. Hsu TH [corrected to Hseu TH].

PMID:
10965121
17.
18.

Rapid evolution of mouse Y centromere repeat DNA belies recent sequence stability.

Pertile MD, Graham AN, Choo KH, Kalitsis P.

Genome Res. 2009 Dec;19(12):2202-13. doi: 10.1101/gr.092080.109. Epub 2009 Sep 8.

19.

Holocentromeres in Rhynchospora are associated with genome-wide centromere-specific repeat arrays interspersed among euchromatin.

Marques A, Ribeiro T, Neumann P, Macas J, Novák P, Schubert V, Pellino M, Fuchs J, Ma W, Kuhlmann M, Brandt R, Vanzela AL, Beseda T, Šimková H, Pedrosa-Harand A, Houben A.

Proc Natl Acad Sci U S A. 2015 Nov 3;112(44):13633-8. doi: 10.1073/pnas.1512255112. Epub 2015 Oct 21. Erratum in: Proc Natl Acad Sci U S A. 2015 Dec 1;112(48):E6720.

20.

Functional centromeres in Astragalus sinicus include a compact centromere-specific histone H3 and a 20-bp tandem repeat.

Tek AL, Kashihara K, Murata M, Nagaki K.

Chromosome Res. 2011 Nov;19(8):969-78. doi: 10.1007/s10577-011-9247-y. Epub 2011 Nov 8.

PMID:
22065151

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