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Items: 1 to 20 of 129

1.

Fast acceleration of 2D wave propagation simulations using modern computational accelerators.

Wang W, Xu L, Cavazos J, Huang HH, Kay M.

PLoS One. 2014 Jan 30;9(1):e86484. doi: 10.1371/journal.pone.0086484. eCollection 2014.

2.

Massive exploration of perturbed conditions of the blood coagulation cascade through GPU parallelization.

Cazzaniga P, Nobile MS, Besozzi D, Bellini M, Mauri G.

Biomed Res Int. 2014;2014:863298. doi: 10.1155/2014/863298. Epub 2014 Jun 16.

3.

CUDA-BLASTP: accelerating BLASTP on CUDA-enabled graphics hardware.

Liu W, Schmidt B, Müller-Wittig W.

IEEE/ACM Trans Comput Biol Bioinform. 2011 Nov-Dec;8(6):1678-84. doi: 10.1109/TCBB.2011.33.

PMID:
21339531
4.

Comparison of GPU- and CPU-implementations of mean-firing rate neural networks on parallel hardware.

Dinkelbach HÜ, Vitay J, Beuth F, Hamker FH.

Network. 2012;23(4):212-36. doi: 10.3109/0954898X.2012.739292. Epub 2012 Nov 9.

PMID:
23140422
5.

NMF-mGPU: non-negative matrix factorization on multi-GPU systems.

Mejía-Roa E, Tabas-Madrid D, Setoain J, García C, Tirado F, Pascual-Montano A.

BMC Bioinformatics. 2015 Feb 13;16:43. doi: 10.1186/s12859-015-0485-4.

6.

A combined MPI-CUDA parallel solution of linear and nonlinear Poisson-Boltzmann equation.

Colmenares J, Galizia A, Ortiz J, Clematis A, Rocchia W.

Biomed Res Int. 2014;2014:560987. doi: 10.1155/2014/560987. Epub 2014 Jun 12.

7.

Parallelized computation for computer simulation of electrocardiograms using personal computers with multi-core CPU and general-purpose GPU.

Shen W, Wei D, Xu W, Zhu X, Yuan S.

Comput Methods Programs Biomed. 2010 Oct;100(1):87-96. doi: 10.1016/j.cmpb.2010.06.015. Epub 2010 Jul 31.

PMID:
20674066
8.

Comparison of Acceleration Techniques for Selected Low-Level Bioinformatics Operations.

Langenkämper D, Jakobi T, Feld D, Jelonek L, Goesmann A, Nattkemper TW.

Front Genet. 2016 Feb 10;7:5. doi: 10.3389/fgene.2016.00005. eCollection 2016.

9.

Heterogeneous computing architecture for fast detection of SNP-SNP interactions.

Sluga D, Curk T, Zupan B, Lotric U.

BMC Bioinformatics. 2014 Jun 25;15:216. doi: 10.1186/1471-2105-15-216.

10.

GPU accelerated dynamic functional connectivity analysis for functional MRI data.

Akgün D, Sakoğlu Ü, Esquivel J, Adinoff B, Mete M.

Comput Med Imaging Graph. 2015 Jul;43:53-63. doi: 10.1016/j.compmedimag.2015.02.009. Epub 2015 Mar 7.

PMID:
25805449
11.

GPUs, a new tool of acceleration in CFD: efficiency and reliability on smoothed particle hydrodynamics methods.

Crespo AC, Dominguez JM, Barreiro A, Gómez-Gesteira M, Rogers BD.

PLoS One. 2011;6(6):e20685. doi: 10.1371/journal.pone.0020685. Epub 2011 Jun 13.

12.

Exploiting graphics processing units for computational biology and bioinformatics.

Payne JL, Sinnott-Armstrong NA, Moore JH.

Interdiscip Sci. 2010 Sep;2(3):213-20. doi: 10.1007/s12539-010-0002-4. Epub 2010 Jul 25.

13.

A nonvoxel-based dose convolution/superposition algorithm optimized for scalable GPU architectures.

Neylon J, Sheng K, Yu V, Chen Q, Low DA, Kupelian P, Santhanam A.

Med Phys. 2014 Oct;41(10):101711. doi: 10.1118/1.4895822.

PMID:
25281950
14.

Density-based parallel skin lesion border detection with webCL.

Lemon J, Kockara S, Halic T, Mete M.

BMC Bioinformatics. 2015;16 Suppl 13:S5. doi: 10.1186/1471-2105-16-S13-S5. Epub 2015 Sep 25.

15.

Fast reconstruction of 3D volumes from 2D CT projection data with GPUs.

Leeser M, Mukherjee S, Brock J.

BMC Res Notes. 2014 Aug 30;7:582. doi: 10.1186/1756-0500-7-582.

16.
17.

Parallel acceleration for modeling of calcium dynamics in cardiac myocytes.

Liu K, Yao G, Yu Z.

Biomed Mater Eng. 2014;24(1):1417-24. doi: 10.3233/BME-130946.

18.

GPU accelerated biochemical network simulation.

Zhou Y, Liepe J, Sheng X, Stumpf MP, Barnes C.

Bioinformatics. 2011 Mar 15;27(6):874-6. doi: 10.1093/bioinformatics/btr015. Epub 2011 Jan 11.

19.

Graphics Processing Unit Acceleration and Parallelization of GENESIS for Large-Scale Molecular Dynamics Simulations.

Jung J, Naurse A, Kobayashi C, Sugita Y.

J Chem Theory Comput. 2016 Oct 11;12(10):4947-4958. Epub 2016 Sep 27.

PMID:
27631425
20.

B-MIC: An Ultrafast Three-Level Parallel Sequence Aligner Using MIC.

Cui Y, Liao X, Zhu X, Wang B, Peng S.

Interdiscip Sci. 2016 Mar;8(1):28-34. doi: 10.1007/s12539-015-0278-5. Epub 2015 Sep 10.

PMID:
26358141

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