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Items: 1 to 20 of 103

1.

New microRNAs in Drosophila--birth, death and cycles of adaptive evolution.

Lyu Y, Shen Y, Li H, Chen Y, Guo L, Zhao Y, Hungate E, Shi S, Wu CI, Tang T.

PLoS Genet. 2014 Jan;10(1):e1004096. doi: 10.1371/journal.pgen.1004096.

2.

Adaptive evolution of testis-specific, recently evolved, clustered miRNAs in Drosophila.

Mohammed J, Bortolamiol-Becet D, Flynt AS, Gronau I, Siepel A, Lai EC.

RNA. 2014 Aug;20(8):1195-209. doi: 10.1261/rna.044644.114.

3.

Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs.

Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC.

Genome Res. 2007 Dec;17(12):1850-64.

4.

Adaptive evolution of newly emerged micro-RNA genes in Drosophila.

Lu J, Fu Y, Kumar S, Shen Y, Zeng K, Xu A, Carthew R, Wu CI.

Mol Biol Evol. 2008 May;25(5):929-38. doi: 10.1093/molbev/msn040.

5.

The impact of age, biogenesis, and genomic clustering on Drosophila microRNA evolution.

Mohammed J, Flynt AS, Siepel A, Lai EC.

RNA. 2013 Sep;19(9):1295-308. doi: 10.1261/rna.039248.113.

6.

Functional shifts in insect microRNA evolution.

Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S.

Genome Biol Evol. 2010;2:686-96. doi: 10.1093/gbe/evq053.

7.

Evolution of Hox post-transcriptional regulation by alternative polyadenylation and microRNA modulation within 12 Drosophila genomes.

Patraquim P, Warnefors M, Alonso CR.

Mol Biol Evol. 2011 Sep;28(9):2453-60. doi: 10.1093/molbev/msr073.

PMID:
21436120
8.

Functional divergence of the miRNA transcriptome at the onset of Drosophila metamorphosis.

Yeh SD, von Grotthuss M, Gandasetiawan KA, Jayasekera S, Xia XQ, Chan C, Jayaswal V, Ranz JM.

Mol Biol Evol. 2014 Oct;31(10):2557-72. doi: 10.1093/molbev/msu195.

PMID:
24951729
9.

The birth and death of microRNA genes in Drosophila.

Lu J, Shen Y, Wu Q, Kumar S, He B, Shi S, Carthew RW, Wang SM, Wu CI.

Nat Genet. 2008 Mar;40(3):351-5. doi: 10.1038/ng.73.

PMID:
18278047
10.

microRNA evolution in a human transcription factor and microRNA regulatory network.

Qiu C, Wang J, Yao P, Wang E, Cui Q.

BMC Syst Biol. 2010 Jun 29;4:90. doi: 10.1186/1752-0509-4-90.

11.

Evolution of microRNAs and their targets: are all microRNAs biologically relevant?

Axtell MJ.

Biochim Biophys Acta. 2008 Nov;1779(11):725-34. doi: 10.1016/j.bbagrm.2008.02.007. Review.

PMID:
18342023
12.

The evolution and functional diversification of animal microRNA genes.

Liu N, Okamura K, Tyler DM, Phillips MD, Chung WJ, Lai EC.

Cell Res. 2008 Oct;18(10):985-96. doi: 10.1038/cr.2008.278. Review.

13.

The evolving role of microRNAs in animal gene expression.

Massirer KB, Pasquinelli AE.

Bioessays. 2006 May;28(5):449-52. Review.

PMID:
16615087
14.

Computational identification of Drosophila microRNA genes.

Lai EC, Tomancak P, Williams RW, Rubin GM.

Genome Biol. 2003;4(7):R42.

15.

Integrative analysis of young genes, positively selected genes and lncRNAs in the development of Drosophila melanogaster.

Liu HQ, Li Y, Irwin DM, Zhang YP, Wu DD.

BMC Evol Biol. 2014 Dec 4;14:241. doi: 10.1186/s12862-014-0241-9.

16.

Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis.

Ninova M, Ronshaugen M, Griffiths-Jones S.

RNA. 2014 Mar;20(3):360-72. doi: 10.1261/rna.041657.113.

17.

Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes.

Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M.

Genome Res. 2007 Dec;17(12):1865-79.

18.

Accelerated sequence divergence of conserved genomic elements in Drosophila melanogaster.

Holloway AK, Begun DJ, Siepel A, Pollard KS.

Genome Res. 2008 Oct;18(10):1592-601. doi: 10.1101/gr.077131.108.

19.

Sequence relationships among C. elegans, D. melanogaster and human microRNAs highlight the extensive conservation of microRNAs in biology.

Ibáñez-Ventoso C, Vora M, Driscoll M.

PLoS One. 2008 Jul 30;3(7):e2818. doi: 10.1371/journal.pone.0002818.

20.

Pleiotropic constraints, expression level, and the evolution of miRNA sequences.

Jovelin R.

J Mol Evol. 2013 Dec;77(5-6):206-20. doi: 10.1007/s00239-013-9588-6.

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