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Items: 1 to 20 of 93

1.

Refining a key metabolic innovation in Escherichia coli.

Kryazhimskiy S, Desai MM.

Proc Natl Acad Sci U S A. 2014 Feb 11;111(6):2056-7. doi: 10.1073/pnas.1323189111. Epub 2014 Jan 23. No abstract available.

2.

Recursive genomewide recombination and sequencing reveals a key refinement step in the evolution of a metabolic innovation in Escherichia coli.

Quandt EM, Deatherage DE, Ellington AD, Georgiou G, Barrick JE.

Proc Natl Acad Sci U S A. 2014 Feb 11;111(6):2217-22. doi: 10.1073/pnas.1314561111. Epub 2013 Dec 30.

3.

Order and disorder during Escherichia coli divergence.

Hendrickson H.

PLoS Genet. 2009 Jan;5(1):e1000335. doi: 10.1371/journal.pgen.1000335. Epub 2009 Jan 23. No abstract available.

4.
5.

Genome dynamics and its impact on evolution of Escherichia coli.

Dobrindt U, Chowdary MG, Krumbholz G, Hacker J.

Med Microbiol Immunol. 2010 Aug;199(3):145-54. doi: 10.1007/s00430-010-0161-2. Epub 2010 May 6. Review.

PMID:
20445988
6.

Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths.

Touchon M, Hoede C, Tenaillon O, Barbe V, Baeriswyl S, Bidet P, Bingen E, Bonacorsi S, Bouchier C, Bouvet O, Calteau A, Chiapello H, Clermont O, Cruveiller S, Danchin A, Diard M, Dossat C, Karoui ME, Frapy E, Garry L, Ghigo JM, Gilles AM, Johnson J, Le Bouguénec C, Lescat M, Mangenot S, Martinez-Jéhanne V, Matic I, Nassif X, Oztas S, Petit MA, Pichon C, Rouy Z, Ruf CS, Schneider D, Tourret J, Vacherie B, Vallenet D, Médigue C, Rocha EP, Denamur E.

PLoS Genet. 2009 Jan;5(1):e1000344. doi: 10.1371/journal.pgen.1000344. Epub 2009 Jan 23.

7.

Molecular archaeology of the Escherichia coli genome.

Lawrence JG, Ochman H.

Proc Natl Acad Sci U S A. 1998 Aug 4;95(16):9413-7.

8.

50 million years of genomic stasis in endosymbiotic bacteria.

Tamas I, Klasson L, Canbäck B, Näslund AK, Eriksson AS, Wernegreen JJ, Sandström JP, Moran NA, Andersson SG.

Science. 2002 Jun 28;296(5577):2376-9.

9.

Pathogenomics of the virulence plasmids of Escherichia coli.

Johnson TJ, Nolan LK.

Microbiol Mol Biol Rev. 2009 Dec;73(4):750-74. doi: 10.1128/MMBR.00015-09. Review. Erratum in: Microbiol Mol Biol Rev. 2010 Sep;74(3):477-8.

10.

Construction of synthetic gene circuits in the Escherichia coli genome.

Ying BW, Akeno Y, Yomo T.

Methods Mol Biol. 2013;1073:157-68. doi: 10.1007/978-1-62703-625-2_13.

PMID:
23996446
11.

The recombination hot spot chi is embedded within islands of preferred DNA pairing sequences in the E. coli genome.

Tracy RB, Chédin F, Kowalczykowski SC.

Cell. 1997 Jul 25;90(2):205-6. No abstract available.

12.

Further evidence of constrained radiation in the evolution of pathogenic Escherichia coli O157:H7.

Leopold SR, Shaikh N, Tarr PI.

Infect Genet Evol. 2010 Dec;10(8):1282-5. doi: 10.1016/j.meegid.2010.07.021. Epub 2010 Aug 5.

13.

Genomic analysis of a key innovation in an experimental Escherichia coli population.

Blount ZD, Barrick JE, Davidson CJ, Lenski RE.

Nature. 2012 Sep 27;489(7417):513-8. doi: 10.1038/nature11514. Epub 2012 Sep 19.

14.

Genomic sequencing reveals regulatory mutations and recombinational events in the widely used MC4100 lineage of Escherichia coli K-12.

Ferenci T, Zhou Z, Betteridge T, Ren Y, Liu Y, Feng L, Reeves PR, Wang L.

J Bacteriol. 2009 Jun;191(12):4025-9. doi: 10.1128/JB.00118-09. Epub 2009 Apr 17.

15.

Shaking up genome engineering.

Tipton KA, Dueber J.

Nat Biotechnol. 2010 Aug;28(8):812-3. doi: 10.1038/nbt0810-812. No abstract available.

PMID:
20697406
16.

Genome-scale genetic engineering in Escherichia coli.

Jeong J, Cho N, Jung D, Bang D.

Biotechnol Adv. 2013 Nov;31(6):804-10. doi: 10.1016/j.biotechadv.2013.04.003. Epub 2013 Apr 24. Review.

PMID:
23624241
17.

Evolution: bacterial mutation in stationary phase.

Sniegowski P.

Curr Biol. 2004 Mar 23;14(6):R245-6. Review.

18.

Mutation, recombination, and incipient speciation of bacteria in the laboratory.

Vulić M, Lenski RE, Radman M.

Proc Natl Acad Sci U S A. 1999 Jun 22;96(13):7348-51.

19.

Scarless engineering of the Escherichia coli genome.

Fehér T, Karcagi I, Gyorfy Z, Umenhoffer K, Csörgo B, Pósfai G.

Methods Mol Biol. 2008;416:251-9. doi: 10.1007/978-1-59745-321-9_16.

PMID:
18392972
20.

Impact of homologous and non-homologous recombination in the genomic evolution of Escherichia coli.

Didelot X, Méric G, Falush D, Darling AE.

BMC Genomics. 2012 Jun 19;13:256. doi: 10.1186/1471-2164-13-256.

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