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Items: 1 to 20 of 89

1.

De novo inference of systems-level mechanistic models of development from live-imaging-based phenotype analysis.

Du Z, Santella A, He F, Tiongson M, Bao Z.

Cell. 2014 Jan 16;156(1-2):359-72. doi: 10.1016/j.cell.2013.11.046.

2.

Digital development: a database of cell lineage differentiation in C. elegans with lineage phenotypes, cell-specific gene functions and a multiscale model.

Santella A, Kovacevic I, Herndon LA, Hall DH, Du Z, Bao Z.

Nucleic Acids Res. 2016 Jan 4;44(D1):D781-5. doi: 10.1093/nar/gkv1119. Epub 2015 Oct 25.

3.

The Regulatory Landscape of Lineage Differentiation in a Metazoan Embryo.

Du Z, Santella A, He F, Shah PK, Kamikawa Y, Bao Z.

Dev Cell. 2015 Sep 14;34(5):592-607. doi: 10.1016/j.devcel.2015.07.014. Epub 2015 Aug 27.

4.
5.

An Observation-Driven Agent-Based Modeling and Analysis Framework for C. elegans Embryogenesis.

Wang Z, Ramsey BJ, Wang D, Wong K, Li H, Wang E, Bao Z.

PLoS One. 2016 Nov 16;11(11):e0166551. doi: 10.1371/journal.pone.0166551. eCollection 2016.

6.

The first cell cycle of the Caenorhabditis elegans embryo: spatial and temporal control of an asymmetric cell division.

Begasse ML, Hyman AA.

Results Probl Cell Differ. 2011;53:109-33. doi: 10.1007/978-3-642-19065-0_6. Review.

PMID:
21630143
7.
8.

Systematic quantification of developmental phenotypes at single-cell resolution during embryogenesis.

Moore JL, Du Z, Bao Z.

Development. 2013 Aug;140(15):3266-74. doi: 10.1242/dev.096040.

9.

Imaging Caenorhabditis elegans embryogenesis by third-harmonic generation microscopy.

Tserevelakis GJ, Filippidis G, Krmpot AJ, Vlachos M, Fotakis C, Tavernarakis N.

Micron. 2010 Jul;41(5):444-7. doi: 10.1016/j.micron.2010.02.006. Epub 2010 Feb 18.

PMID:
20207548
10.
11.

Live-imaging analysis of germ cell proliferation in the C. elegans adult supports a stochastic model for stem cell proliferation.

Rosu S, Cohen-Fix O.

Dev Biol. 2017 Mar 15;423(2):93-100. doi: 10.1016/j.ydbio.2017.02.008. Epub 2017 Feb 17.

PMID:
28215939
13.

A high-fidelity cell lineage tracing method for obtaining systematic spatiotemporal gene expression patterns in Caenorhabditis elegans.

Mace DL, Weisdepp P, Gevirtzman L, Boyle T, Waterston RH.

G3 (Bethesda). 2013 May 20;3(5):851-63. doi: 10.1534/g3.113.005918.

14.

Analysis of cell fate from single-cell gene expression profiles in C. elegans.

Liu X, Long F, Peng H, Aerni SJ, Jiang M, Sánchez-Blanco A, Murray JI, Preston E, Mericle B, Batzoglou S, Myers EW, Kim SK.

Cell. 2009 Oct 30;139(3):623-33. doi: 10.1016/j.cell.2009.08.044.

15.

Cell identification and cell lineage analysis.

Giurumescu CA, Chisholm AD.

Methods Cell Biol. 2011;106:325-41. doi: 10.1016/B978-0-12-544172-8.00012-8.

16.

Comprehensive single cell-resolution analysis of the role of chromatin regulators in early C. elegans embryogenesis.

Krüger AV, Jelier R, Dzyubachyk O, Zimmerman T, Meijering E, Lehner B.

Dev Biol. 2015 Feb 15;398(2):153-62. doi: 10.1016/j.ydbio.2014.10.014. Epub 2014 Oct 28.

17.

Genetic networks in the early development of Caenorhabditis elegans.

Platzer U, Meinzer HP.

Int Rev Cytol. 2004;234:47-100. Review.

PMID:
15066373
18.

The embryonic cell lineage of the nematode Rhabditophanes sp.

Houthoofd W, Willems M, Jacobsen K, Coomans A, Borgonie G.

Int J Dev Biol. 2008;52(7):963-7. doi: 10.1387/ijdb.072404wh.

19.

Systems-level quantification of division timing reveals a common genetic architecture controlling asynchrony and fate asymmetry.

Ho VW, Wong MK, An X, Guan D, Shao J, Ng HC, Ren X, He K, Liao J, Ang Y, Chen L, Huang X, Yan B, Xia Y, Chan LL, Chow KL, Yan H, Zhao Z.

Mol Syst Biol. 2015 Jun 10;11(6):814. doi: 10.15252/msb.20145857.

20.

Epithelial biology: lessons from Caenorhabditis elegans.

Michaux G, Legouis R, Labouesse M.

Gene. 2001 Oct 17;277(1-2):83-100. Review.

PMID:
11602346

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