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In vivo determination of direct targets of the nonsense-mediated decay pathway in Drosophila.

Chapin A, Hu H, Rynearson SG, Hollien J, Yandell M, Metzstein MM.

G3 (Bethesda). 2014 Mar 20;4(3):485-96. doi: 10.1534/g3.113.009357.


Genome-wide identification of alternative splice forms down-regulated by nonsense-mediated mRNA decay in Drosophila.

Hansen KD, Lareau LF, Blanchette M, Green RE, Meng Q, Rehwinkel J, Gallusser FL, Izaurralde E, Rio DC, Dudoit S, Brenner SE.

PLoS Genet. 2009 Jun;5(6):e1000525. doi: 10.1371/journal.pgen.1000525. Epub 2009 Jun 19.


Nonsense-mediated mRNA decay factors act in concert to regulate common mRNA targets.

Rehwinkel J, Letunic I, Raes J, Bork P, Izaurralde E.

RNA. 2005 Oct;11(10):1530-44.


Reactivation Assay to Identify Direct Targets of the Nonsense-Mediated mRNA Decay Pathway in Drosophila.

Nelson JO, Metzstein MM.

Methods Mol Biol. 2018;1720:205-211. doi: 10.1007/978-1-4939-7540-2_15.


Drosophila mutants show NMD pathway activity is reduced, but not eliminated, in the absence of Smg6.

Frizzell KA, Rynearson SG, Metzstein MM.

RNA. 2012 Aug;18(8):1475-86. doi: 10.1261/rna.032821.112. Epub 2012 Jun 27.


Global analyses of UPF1 binding and function reveal expanded scope of nonsense-mediated mRNA decay.

Hurt JA, Robertson AD, Burge CB.

Genome Res. 2013 Oct;23(10):1636-50. doi: 10.1101/gr.157354.113. Epub 2013 Jun 13.


Regulation of natural mRNAs by the nonsense-mediated mRNA decay pathway.

Peccarelli M, Kebaara BW.

Eukaryot Cell. 2014 Sep;13(9):1126-35. doi: 10.1128/EC.00090-14. Epub 2014 Jul 18. Review.


mRNAs involved in copper homeostasis are regulated by the nonsense-mediated mRNA decay pathway depending on environmental conditions.

Peccarelli M, Scott TD, Steele M, Kebaara BW.

Fungal Genet Biol. 2016 Jan;86:81-90. doi: 10.1016/j.fgb.2015.12.011. Epub 2015 Dec 19.


Drosophila Upf1 and Upf2 loss of function inhibits cell growth and causes animal death in a Upf3-independent manner.

Avery P, Vicente-Crespo M, Francis D, Nashchekina O, Alonso CR, Palacios IM.

RNA. 2011 Apr;17(4):624-38. doi: 10.1261/rna.2404211. Epub 2011 Feb 11.


Long 3'-UTRs target wild-type mRNAs for nonsense-mediated mRNA decay in Saccharomyces cerevisiae.

Kebaara BW, Atkin AL.

Nucleic Acids Res. 2009 May;37(9):2771-8. doi: 10.1093/nar/gkp146. Epub 2009 Mar 6.


Autoregulation of the nonsense-mediated mRNA decay pathway in human cells.

Yepiskoposyan H, Aeschimann F, Nilsson D, Okoniewski M, Mühlemann O.

RNA. 2011 Dec;17(12):2108-18. doi: 10.1261/rna.030247.111. Epub 2011 Oct 25.


Functions of the nonsense-mediated mRNA decay pathway in Drosophila development.

Metzstein MM, Krasnow MA.

PLoS Genet. 2006 Dec 29;2(12):e180. Epub 2006 Sep 6.


Impact of nonsense-mediated mRNA decay on the global expression profile of budding yeast.

Guan Q, Zheng W, Tang S, Liu X, Zinkel RA, Tsui KW, Yandell BS, Culbertson MR.

PLoS Genet. 2006 Nov 24;2(11):e203. Epub 2006 Oct 18.


Contribution of copy number variants involving nonsense-mediated mRNA decay pathway genes to neuro-developmental disorders.

Nguyen LS, Kim HG, Rosenfeld JA, Shen Y, Gusella JF, Lacassie Y, Layman LC, Shaffer LG, Gécz J.

Hum Mol Genet. 2013 May 1;22(9):1816-25. doi: 10.1093/hmg/ddt035. Epub 2013 Jan 31.


A conserved role for cytoplasmic poly(A)-binding protein 1 (PABPC1) in nonsense-mediated mRNA decay.

Behm-Ansmant I, Gatfield D, Rehwinkel J, Hilgers V, Izaurralde E.

EMBO J. 2007 Mar 21;26(6):1591-601. Epub 2007 Feb 22.


The Substrates of Nonsense-Mediated mRNA Decay in Caenorhabditis elegans.

Muir VS, Gasch AP, Anderson P.

G3 (Bethesda). 2017 Nov 9. pii: g3.300254.2017. doi: 10.1534/g3.117.300254. [Epub ahead of print]


Gene set coregulated by the Saccharomyces cerevisiae nonsense-mediated mRNA decay pathway.

Taylor R, Kebaara BW, Nazarenus T, Jones A, Yamanaka R, Uhrenholdt R, Wendler JP, Atkin AL.

Eukaryot Cell. 2005 Dec;4(12):2066-77.


Nonsense-mediated mRNA decay in Drosophila: at the intersection of the yeast and mammalian pathways.

Gatfield D, Unterholzner L, Ciccarelli FD, Bork P, Izaurralde E.

EMBO J. 2003 Aug 1;22(15):3960-70.


Nonsense-mediated decay of alternative precursor mRNA splicing variants is a major determinant of the Arabidopsis steady state transcriptome.

Drechsel G, Kahles A, Kesarwani AK, Stauffer E, Behr J, Drewe P, Rätsch G, Wachter A.

Plant Cell. 2013 Oct;25(10):3726-42. doi: 10.1105/tpc.113.115485. Epub 2013 Oct 25.


MicroRNA 433 regulates nonsense-mediated mRNA decay by targeting SMG5 mRNA.

Jin Y, Zhang F, Ma Z, Ren Z.

BMC Mol Biol. 2016 Jul 29;17(1):17. doi: 10.1186/s12867-016-0070-z.

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