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Items: 1 to 20 of 120

1.

Elephant shark genome provides unique insights into gnathostome evolution.

Venkatesh B, Lee AP, Ravi V, Maurya AK, Lian MM, Swann JB, Ohta Y, Flajnik MF, Sutoh Y, Kasahara M, Hoon S, Gangu V, Roy SW, Irimia M, Korzh V, Kondrychyn I, Lim ZW, Tay BH, Tohari S, Kong KW, Ho S, Lorente-Galdos B, Quilez J, Marques-Bonet T, Raney BJ, Ingham PW, Tay A, Hillier LW, Minx P, Boehm T, Wilson RK, Brenner S, Warren WC.

Nature. 2014 Jan 9;505(7482):174-9. doi: 10.1038/nature12826. Erratum in: Nature. 2014 Sep 25;513(7519):574.

2.

Elephant shark sequence reveals unique insights into the evolutionary history of vertebrate genes: A comparative analysis of the protocadherin cluster.

Yu WP, Rajasegaran V, Yew K, Loh WL, Tay BH, Amemiya CT, Brenner S, Venkatesh B.

Proc Natl Acad Sci U S A. 2008 Mar 11;105(10):3819-24. doi: 10.1073/pnas.0800398105. Epub 2008 Mar 4.

3.

Expression of Wnt signaling skeletal development genes in the cartilaginous fish, elephant shark (Callorhinchus milii).

D'Souza DG, Rana K, Milley KM, MacLean HE, Zajac JD, Bell J, Brenner S, Venkatesh B, Richardson SJ, Danks JA.

Gen Comp Endocrinol. 2013 Nov 1;193:1-9. doi: 10.1016/j.ygcen.2013.06.021. Epub 2013 Jul 16.

PMID:
23871650
4.

Parathyroid hormone gene family in a cartilaginous fish, the elephant shark (Callorhinchus milii).

Liu Y, Ibrahim AS, Tay BH, Richardson SJ, Bell J, Walker TI, Brenner S, Venkatesh B, Danks JA.

J Bone Miner Res. 2010 Dec;25(12):2613-23. doi: 10.1002/jbmr.178. Epub 2010 Jul 7. Erratum in: J Bone Miner Res. 2011 Feb;26(2):439.

5.

Ancient Duplications and Expression Divergence in the Globin Gene Superfamily of Vertebrates: Insights from the Elephant Shark Genome and Transcriptome.

Opazo JC, Lee AP, Hoffmann FG, Toloza-Villalobos J, Burmester T, Venkatesh B, Storz JF.

Mol Biol Evol. 2015 Jul;32(7):1684-94. doi: 10.1093/molbev/msv054. Epub 2015 Mar 4.

6.

Elephant shark (Callorhinchus milii) provides insights into the evolution of Hox gene clusters in gnathostomes.

Ravi V, Lam K, Tay BH, Tay A, Brenner S, Venkatesh B.

Proc Natl Acad Sci U S A. 2009 Sep 22;106(38):16327-32. doi: 10.1073/pnas.0907914106. Epub 2009 Sep 3.

7.

Alternative adaptive immunity strategies: coelacanth, cod and shark immunity.

Buonocore F, Gerdol M.

Mol Immunol. 2016 Jan;69:157-69. doi: 10.1016/j.molimm.2015.09.003. Epub 2015 Sep 28. Review.

8.

Survey sequencing and comparative analysis of the elephant shark (Callorhinchus milii) genome.

Venkatesh B, Kirkness EF, Loh YH, Halpern AL, Lee AP, Johnson J, Dandona N, Viswanathan LD, Tay A, Venter JC, Strausberg RL, Brenner S.

PLoS Biol. 2007 Apr;5(4):e101.

9.
10.

Into the blue: gene duplication and loss underlie color vision adaptations in a deep-sea chimaera, the elephant shark Callorhinchus milii.

Davies WL, Carvalho LS, Tay BH, Brenner S, Hunt DM, Venkatesh B.

Genome Res. 2009 Mar;19(3):415-26. doi: 10.1101/gr.084509.108. Epub 2009 Feb 4.

11.

Ancient noncoding elements conserved in the human genome.

Venkatesh B, Kirkness EF, Loh YH, Halpern AL, Lee AP, Johnson J, Dandona N, Viswanathan LD, Tay A, Venter JC, Strausberg RL, Brenner S.

Science. 2006 Dec 22;314(5807):1892. Erratum in: Science. 2007 Feb 9;315(5813):766.

12.

Runx family genes in a cartilaginous fish, the elephant shark (Callorhinchus milii).

Nah GS, Lim ZW, Tay BH, Osato M, Venkatesh B.

PLoS One. 2014 Apr 3;9(4):e93816. doi: 10.1371/journal.pone.0093816. eCollection 2014.

13.

Sequencing and analysis of full-length cDNAs, 5'-ESTs and 3'-ESTs from a cartilaginous fish, the elephant shark (Callorhinchus milii).

Tan YY, Kodzius R, Tay BH, Tay A, Brenner S, Venkatesh B.

PLoS One. 2012;7(10):e47174. doi: 10.1371/journal.pone.0047174. Epub 2012 Oct 8.

15.

Early Evolution of Vertebrate Mybs: An Integrative Perspective Combining Synteny, Phylogenetic, and Gene Expression Analyses.

Campanini EB, Vandewege MW, Pillai NE, Tay BH, Jones JL, Venkatesh B, Hoffmann FG.

Genome Biol Evol. 2015 Oct 15;7(11):3009-21. doi: 10.1093/gbe/evv197.

PMID:
26475318
16.

Heterogeneous conservation of Dlx paralog co-expression in jawed vertebrates.

Debiais-Thibaud M, Metcalfe CJ, Pollack J, Germon I, Ekker M, Depew M, Laurenti P, Borday-Birraux V, Casane D.

PLoS One. 2013 Jun 28;8(6):e68182. doi: 10.1371/journal.pone.0068182. Print 2013.

17.

Neuropeptide Y-family peptides and receptors in the elephant shark, Callorhinchus milii confirm gene duplications before the gnathostome radiation.

Larsson TA, Tay BH, Sundström G, Fredriksson R, Brenner S, Larhammar D, Venkatesh B.

Genomics. 2009 Mar;93(3):254-60. doi: 10.1016/j.ygeno.2008.10.001. Epub 2008 Dec 4.

18.

Lineage-specific expansion of IFIT gene family: an insight into coevolution with IFN gene family.

Liu Y, Zhang YB, Liu TK, Gui JF.

PLoS One. 2013 Jun 20;8(6):e66859. doi: 10.1371/journal.pone.0066859. Print 2013.

19.

The African coelacanth genome provides insights into tetrapod evolution.

Amemiya CT, Alföldi J, Lee AP, Fan S, Philippe H, Maccallum I, Braasch I, Manousaki T, Schneider I, Rohner N, Organ C, Chalopin D, Smith JJ, Robinson M, Dorrington RA, Gerdol M, Aken B, Biscotti MA, Barucca M, Baurain D, Berlin AM, Blatch GL, Buonocore F, Burmester T, Campbell MS, Canapa A, Cannon JP, Christoffels A, De Moro G, Edkins AL, Fan L, Fausto AM, Feiner N, Forconi M, Gamieldien J, Gnerre S, Gnirke A, Goldstone JV, Haerty W, Hahn ME, Hesse U, Hoffmann S, Johnson J, Karchner SI, Kuraku S, Lara M, Levin JZ, Litman GW, Mauceli E, Miyake T, Mueller MG, Nelson DR, Nitsche A, Olmo E, Ota T, Pallavicini A, Panji S, Picone B, Ponting CP, Prohaska SJ, Przybylski D, Saha NR, Ravi V, Ribeiro FJ, Sauka-Spengler T, Scapigliati G, Searle SM, Sharpe T, Simakov O, Stadler PF, Stegeman JJ, Sumiyama K, Tabbaa D, Tafer H, Turner-Maier J, van Heusden P, White S, Williams L, Yandell M, Brinkmann H, Volff JN, Tabin CJ, Shubin N, Schartl M, Jaffe DB, Postlethwait JH, Venkatesh B, Di Palma F, Lander ES, Meyer A, Lindblad-Toh K.

Nature. 2013 Apr 18;496(7445):311-6. doi: 10.1038/nature12027.

20.

Evolution of gene function and regulatory control after whole-genome duplication: comparative analyses in vertebrates.

Kassahn KS, Dang VT, Wilkins SJ, Perkins AC, Ragan MA.

Genome Res. 2009 Aug;19(8):1404-18. doi: 10.1101/gr.086827.108. Epub 2009 May 13.

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