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Items: 1 to 20 of 139

1.

MIDDAS-M: motif-independent de novo detection of secondary metabolite gene clusters through the integration of genome sequencing and transcriptome data.

Umemura M, Koike H, Nagano N, Ishii T, Kawano J, Yamane N, Kozone I, Horimoto K, Shin-ya K, Asai K, Yu J, Bennett JW, Machida M.

PLoS One. 2013 Dec 31;8(12):e84028. doi: 10.1371/journal.pone.0084028. eCollection 2013.

2.

Motif-independent de novo detection of secondary metabolite gene clusters-toward identification from filamentous fungi.

Umemura M, Koike H, Machida M.

Front Microbiol. 2015 May 5;6:371. doi: 10.3389/fmicb.2015.00371. eCollection 2015. Review.

3.
4.

Genome-based analysis of non-ribosomal peptide synthetase and type-I polyketide synthase gene clusters in all type strains of the genus Herbidospora.

Komaki H, Ichikawa N, Oguchi A, Hamada M, Tamura T, Fujita N.

BMC Res Notes. 2015 Oct 9;8:548. doi: 10.1186/s13104-015-1526-9.

5.

Transcriptional regulation of chemical diversity in Aspergillus fumigatus by LaeA.

Perrin RM, Fedorova ND, Bok JW, Cramer RA, Wortman JR, Kim HS, Nierman WC, Keller NP.

PLoS Pathog. 2007 Apr;3(4):e50.

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7.

Chemical induction of silent biosynthetic pathway transcription in Aspergillus niger.

Fisch KM, Gillaspy AF, Gipson M, Henrikson JC, Hoover AR, Jackson L, Najar FZ, Wägele H, Cichewicz RH.

J Ind Microbiol Biotechnol. 2009 Sep;36(9):1199-213. doi: 10.1007/s10295-009-0601-4. Epub 2009 Jun 12.

PMID:
19521728
8.

Atlas of nonribosomal peptide and polyketide biosynthetic pathways reveals common occurrence of nonmodular enzymes.

Wang H, Fewer DP, Holm L, Rouhiainen L, Sivonen K.

Proc Natl Acad Sci U S A. 2014 Jun 24;111(25):9259-64. doi: 10.1073/pnas.1401734111. Epub 2014 Jun 9.

9.

Phylogenetically diverse cultivable fungal community and polyketide synthase (PKS), non-ribosomal peptide synthase (NRPS) genes associated with the South China Sea sponges.

Zhou K, Zhang X, Zhang F, Li Z.

Microb Ecol. 2011 Oct;62(3):644-54. doi: 10.1007/s00248-011-9859-y. Epub 2011 Apr 26.

PMID:
21519913
11.

The nonribosomal peptide and polyketide synthetic gene clusters in two strains of entomopathogenic fungi in Cordyceps.

Wang WJ, Vogel H, Yao YJ, Ping L.

FEMS Microbiol Lett. 2012 Nov;336(2):89-97. doi: 10.1111/j.1574-6968.2012.02658.x. Epub 2012 Sep 18.

12.

In silico analysis of methyltransferase domains involved in biosynthesis of secondary metabolites.

Ansari MZ, Sharma J, Gokhale RS, Mohanty D.

BMC Bioinformatics. 2008 Oct 25;9:454. doi: 10.1186/1471-2105-9-454.

13.

Activation of a silent fungal polyketide biosynthesis pathway through regulatory cross talk with a cryptic nonribosomal peptide synthetase gene cluster.

Bergmann S, Funk AN, Scherlach K, Schroeckh V, Shelest E, Horn U, Hertweck C, Brakhage AA.

Appl Environ Microbiol. 2010 Dec;76(24):8143-9. doi: 10.1128/AEM.00683-10. Epub 2010 Oct 15.

14.

Genomic and transcriptomic analysis of the endophytic fungus Pestalotiopsis fici reveals its lifestyle and high potential for synthesis of natural products.

Wang X, Zhang X, Liu L, Xiang M, Wang W, Sun X, Che Y, Guo L, Liu G, Guo L, Wang C, Yin WB, Stadler M, Zhang X, Liu X.

BMC Genomics. 2015 Jan 27;16:28. doi: 10.1186/s12864-014-1190-9.

15.

A proteomic survey of nonribosomal peptide and polyketide biosynthesis in actinobacteria.

Chen Y, Ntai I, Ju KS, Unger M, Zamdborg L, Robinson SJ, Doroghazi JR, Labeda DP, Metcalf WW, Kelleher NL.

J Proteome Res. 2012 Jan 1;11(1):85-94. doi: 10.1021/pr2009115. Epub 2011 Oct 25.

16.

Annotation of the modular polyketide synthase and nonribosomal peptide synthetase gene clusters in the genome of Streptomyces tsukubaensis NRRL18488.

Blazic M, Starcevic A, Lisfi M, Baranasic D, Goranovic D, Fujs S, Kuscer E, Kosec G, Petkovic H, Cullum J, Hranueli D, Zucko J.

Appl Environ Microbiol. 2012 Dec;78(23):8183-90. doi: 10.1128/AEM.01891-12. Epub 2012 Sep 14.

17.

Correlating secondary metabolite production with genetic changes using differential analysis of 2D NMR spectra.

Forseth RR, Schroeder FC.

Methods Mol Biol. 2012;944:207-19. doi: 10.1007/978-1-62703-122-6_15.

18.

CLUSEAN: a computer-based framework for the automated analysis of bacterial secondary metabolite biosynthetic gene clusters.

Weber T, Rausch C, Lopez P, Hoof I, Gaykova V, Huson DH, Wohlleben W.

J Biotechnol. 2009 Mar 10;140(1-2):13-7.

PMID:
19297688
19.

A hybrid NRPS-PKS gene cluster related to the bleomycin family of antitumor antibiotics in Alteromonas macleodii strains.

Mizuno CM, Kimes NE, López-Pérez M, Ausó E, Rodriguez-Valera F, Ghai R.

PLoS One. 2013 Sep 19;8(9):e76021. doi: 10.1371/journal.pone.0076021. eCollection 2013.

20.

antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences.

Medema MH, Blin K, Cimermancic P, de Jager V, Zakrzewski P, Fischbach MA, Weber T, Takano E, Breitling R.

Nucleic Acids Res. 2011 Jul;39(Web Server issue):W339-46. doi: 10.1093/nar/gkr466. Epub 2011 Jun 14.

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