Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 131

1.

Extensible visualization and analysis for multidimensional images using Vaa3D.

Peng H, Bria A, Zhou Z, Iannello G, Long F.

Nat Protoc. 2014 Jan;9(1):193-208. doi: 10.1038/nprot.2014.011. Epub 2014 Jan 2.

PMID:
24385149
2.

The segmentation and visualization of a neuron in the housefly's visual system.

Anderson JR, Barrett SF, Wilcox MJ.

Biomed Sci Instrum. 2005;41:235-40.

PMID:
15850111
3.

V3D enables real-time 3D visualization and quantitative analysis of large-scale biological image data sets.

Peng H, Ruan Z, Long F, Simpson JH, Myers EW.

Nat Biotechnol. 2010 Apr;28(4):348-53. doi: 10.1038/nbt.1612. Epub 2010 Mar 14.

4.

APP2: automatic tracing of 3D neuron morphology based on hierarchical pruning of a gray-weighted image distance-tree.

Xiao H, Peng H.

Bioinformatics. 2013 Jun 1;29(11):1448-54. doi: 10.1093/bioinformatics/btt170. Epub 2013 Apr 19.

5.

Julius--a software framework for computer-aided-surgery.

Burgielski Z, Jansen T, von Rymon-Lipinski B, Hanssen N, Keeve E.

Biomed Tech (Berl). 2002;47 Suppl 1 Pt 1:101-3.

PMID:
12451784
6.

Synchronized 2D/3D optical mapping for interactive exploration and real-time visualization of multi-function neurological images.

Zhang Q, Alexander M, Ryner L.

Comput Med Imaging Graph. 2013 Oct-Dec;37(7-8):552-67. doi: 10.1016/j.compmedimag.2013.06.007. Epub 2013 Aug 20.

PMID:
23968722
7.

LittleQuickWarp: an ultrafast image warping tool.

Qu L, Peng H.

Methods. 2015 Feb;73:38-42. doi: 10.1016/j.ymeth.2014.09.002. Epub 2014 Sep 16.

PMID:
25233807
8.

A method and software for segmentation of anatomic object ensembles by deformable m-reps.

Pizer SM, Fletcher PT, Joshi S, Gash AG, Stough J, Thall A, Tracton G, Chaney EL.

Med Phys. 2005 May;32(5):1335-45.

PMID:
15984685
9.

3D imaging of microbial biofilms: integration of synchrotron imaging and an interactive visualization interface.

Thomas M, Marshall MJ, Miller EA, Kuprat AP, Kleese-van Dam K, Carson JP.

Conf Proc IEEE Eng Med Biol Soc. 2014;2014:3304-7. doi: 10.1109/EMBC.2014.6944329.

PMID:
25570697
10.
11.

BIOCAT: a pattern recognition platform for customizable biological image classification and annotation.

Zhou J, Lamichhane S, Sterne G, Ye B, Peng H.

BMC Bioinformatics. 2013 Oct 4;14:291. doi: 10.1186/1471-2105-14-291.

12.

An analytical tool that quantifies cellular morphology changes from three-dimensional fluorescence images.

Haass-Koffler CL, Naeemuddin M, Bartlett SE.

J Vis Exp. 2012 Aug 31;(66):e4233. doi: 10.3791/4233.

13.

A survey of visualization pipelines.

Moreland K.

IEEE Trans Vis Comput Graph. 2013 Mar;19(3):367-78. Review.

PMID:
22665724
14.

Virtual finger boosts three-dimensional imaging and microsurgery as well as terabyte volume image visualization and analysis.

Peng H, Tang J, Xiao H, Bria A, Zhou J, Butler V, Zhou Z, Gonzalez-Bellido PT, Oh SW, Chen J, Mitra A, Tsien RW, Zeng H, Ascoli GA, Iannello G, Hawrylycz M, Myers E, Long F.

Nat Commun. 2014 Jul 11;5:4342. doi: 10.1038/ncomms5342.

15.

3D visualization and stereographic techniques for medical research and education.

Rydmark M, Kling-Petersen T, Pascher R, Philip F.

Stud Health Technol Inform. 2001;81:434-9.

PMID:
11317785
16.

Visualization and analysis of 3D microscopic images.

Long F, Zhou J, Peng H.

PLoS Comput Biol. 2012;8(6):e1002519. doi: 10.1371/journal.pcbi.1002519. Epub 2012 Jun 14.

17.

Large-scale automatic reconstruction of neuronal processes from electron microscopy images.

Kaynig V, Vazquez-Reina A, Knowles-Barley S, Roberts M, Jones TR, Kasthuri N, Miller E, Lichtman J, Pfister H.

Med Image Anal. 2015 May;22(1):77-88. doi: 10.1016/j.media.2015.02.001. Epub 2015 Mar 2.

18.

The Virtual Insect Brain protocol: creating and comparing standardized neuroanatomy.

Jenett A, Schindelin JE, Heisenberg M.

BMC Bioinformatics. 2006 Dec 29;7:544.

19.

Gebiss: an ImageJ plugin for the specification of ground truth and the performance evaluation of 3D segmentation algorithms.

Kriston-Vizi J, Thong NW, Poh CL, Yee KC, Ling JS, Kraut R, Wasser M.

BMC Bioinformatics. 2011 Jun 13;12:232. doi: 10.1186/1471-2105-12-232.

20.

[The development of a system for 3D reconstruction from DICOM data and collaborative visualization].

Liu S, Liao W, Yu Q, Cheng X, Dai N, Zhang X.

Sheng Wu Yi Xue Gong Cheng Xue Za Zhi. 2007 Oct;24(5):1152-6. Chinese.

PMID:
18027716

Supplemental Content

Support Center