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Items: 1 to 20 of 57

1.

Partitioning the human transcriptome using HKera, a novel classifier of housekeeping and tissue-specific genes.

Chiang AW, Shaw GT, Hwang MJ.

PLoS One. 2013 Dec 20;8(12):e83040. doi: 10.1371/journal.pone.0083040. eCollection 2013.

2.

How many human genes can be defined as housekeeping with current expression data?

Zhu J, He F, Song S, Wang J, Yu J.

BMC Genomics. 2008 Apr 16;9:172. doi: 10.1186/1471-2164-9-172.

3.

Comparative analysis of housekeeping and tissue-specific driver nodes in human protein interaction networks.

Zhang XF, Ou-Yang L, Dai DQ, Wu MY, Zhu Y, Yan H.

BMC Bioinformatics. 2016 Sep 9;17(1):358. doi: 10.1186/s12859-016-1233-0.

4.

Identification and analysis of house-keeping and tissue-specific genes based on RNA-seq data sets across 15 mouse tissues.

Zeng J, Liu S, Zhao Y, Tan X, Aljohi HA, Liu W, Hu S.

Gene. 2016 Jan 15;576(1 Pt 3):560-70. doi: 10.1016/j.gene.2015.11.003. Epub 2015 Nov 6.

PMID:
26551299
5.

Identification of human HK genes and gene expression regulation study in cancer from transcriptomics data analysis.

Chen M, Xiao J, Zhang Z, Liu J, Wu J, Yu J.

PLoS One. 2013;8(1):e54082. doi: 10.1371/journal.pone.0054082. Epub 2013 Jan 31.

6.

Identification of human housekeeping genes and tissue-selective genes by microarray meta-analysis.

Chang CW, Cheng WC, Chen CR, Shu WY, Tsai ML, Huang CL, Hsu IC.

PLoS One. 2011;6(7):e22859. doi: 10.1371/journal.pone.0022859. Epub 2011 Jul 27.

7.

Preservation of ranking order in the expression of human Housekeeping genes.

Shaw GT, Shih ES, Chen CH, Hwang MJ.

PLoS One. 2011;6(12):e29314. doi: 10.1371/journal.pone.0029314. Epub 2011 Dec 22.

8.

DNA entropy reveals a significant difference in complexity between housekeeping and tissue specific gene promoters.

Thomas D, Finan C, Newport MJ, Jones S.

Comput Biol Chem. 2015 Oct;58:19-24. doi: 10.1016/j.compbiolchem.2015.05.001. Epub 2015 May 8.

PMID:
25988219
9.

Knowledge enrichment analysis for human tissue-specific genes uncover new biological insights.

Gong XJ, Yu H, Yang CB, Li YF.

J Integr Bioinform. 2012 Jul 9;9(2):194. doi: 10.2390/biecoll-jib-2012-194.

PMID:
22773159
10.

Do housekeeping genes exist?

Zhang Y, Li D, Sun B.

PLoS One. 2015 May 13;10(5):e0123691. doi: 10.1371/journal.pone.0123691. eCollection 2015.

11.

Novel software package for cross-platform transcriptome analysis (CPTRA).

Zhou X, Su Z, Sammons RD, Peng Y, Tranel PJ, Stewart CN Jr, Yuan JS.

BMC Bioinformatics. 2009 Oct 8;10 Suppl 11:S16. doi: 10.1186/1471-2105-10-S11-S16.

12.

Predicting tissue-specific expressions based on sequence characteristics.

Paik H, Ryu T, Heo HS, Seo SW, Lee D, Hur CG.

BMB Rep. 2011 Apr;44(4):250-5. doi: DOI 10.5483/BMBRep.2011.44.4.250.

13.

Incorporating the human gene annotations in different databases significantly improved transcriptomic and genetic analyses.

Chen G, Wang C, Shi L, Qu X, Chen J, Yang J, Shi C, Chen L, Zhou P, Ning B, Tong W, Shi T.

RNA. 2013 Apr;19(4):479-89. doi: 10.1261/rna.037473.112. Epub 2013 Feb 19.

14.

High-throughput sequencing and analysis of the gill tissue transcriptome from the deep-sea hydrothermal vent mussel Bathymodiolus azoricus.

Bettencourt R, Pinheiro M, Egas C, Gomes P, Afonso M, Shank T, Santos RS.

BMC Genomics. 2010 Oct 11;11:559. doi: 10.1186/1471-2164-11-559.

15.

Gene Ontology based housekeeping gene selection for RNA-seq normalization.

Chen CM, Lu YL, Sio CP, Wu GC, Tzou WS, Pai TW.

Methods. 2014 Jun 1;67(3):354-63. doi: 10.1016/j.ymeth.2014.01.019. Epub 2014 Feb 18.

PMID:
24561167
16.

PlasmoDraft: a database of Plasmodium falciparum gene function predictions based on postgenomic data.

Bréhélin L, Dufayard JF, Gascuel O.

BMC Bioinformatics. 2008 Oct 16;9:440. doi: 10.1186/1471-2105-9-440.

17.

Distinct contributions of replication and transcription to mutation rate variation of human genomes.

Cui P, Ding F, Lin Q, Zhang L, Li A, Zhang Z, Hu S, Yu J.

Genomics Proteomics Bioinformatics. 2012 Feb;10(1):4-10. doi: 10.1016/S1672-0229(11)60028-4.

18.
19.

Membrane gene ontology bias in sequencing and microarray obtained by housekeeping-gene analysis.

Zhang Y, Akintola OS, Liu KJA, Sun B.

Gene. 2016 Jan 10;575(2 Pt 2):559-566. doi: 10.1016/j.gene.2015.09.041. Epub 2015 Sep 25.

PMID:
26407868
20.

Non-housekeeping genes expressed in human trabecular meshwork cell cultures.

Paylakhi SH, Yazdani S, April C, Fan JB, Moazzeni H, Ronaghi M, Elahi E.

Mol Vis. 2012;18:241-54. Epub 2012 Jan 28.

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