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Items: 1 to 20 of 97

1.

Enhanced identification of zero-length chemical cross-links using label-free quantitation and high-resolution fragment ion spectra.

Sriswasdi S, Harper SL, Tang HY, Speicher DW.

J Proteome Res. 2014 Feb 7;13(2):898-914. doi: 10.1021/pr400953w. Epub 2014 Jan 7.

2.

Probing structures of large protein complexes using zero-length cross-linking.

Rivera-Santiago RF, Sriswasdi S, Harper SL, Speicher DW.

Methods. 2015 Nov 1;89:99-111. doi: 10.1016/j.ymeth.2015.04.031. Epub 2015 May 1. Review.

4.

Xlink-identifier: an automated data analysis platform for confident identifications of chemically cross-linked peptides using tandem mass spectrometry.

Du X, Chowdhury SM, Manes NP, Wu S, Mayer MU, Adkins JN, Anderson GA, Smith RD.

J Proteome Res. 2011 Mar 4;10(3):923-31. doi: 10.1021/pr100848a. Epub 2011 Feb 16.

5.

Structure and dynamics of dark-state bovine rhodopsin revealed by chemical cross-linking and high-resolution mass spectrometry.

Jacobsen RB, Sale KL, Ayson MJ, Novak P, Hong J, Lane P, Wood NL, Kruppa GH, Young MM, Schoeniger JS.

Protein Sci. 2006 Jun;15(6):1303-17.

6.

Shotgun cross-linking analysis for studying quaternary and tertiary protein structures.

Lee YJ, Lackner LL, Nunnari JM, Phinney BS.

J Proteome Res. 2007 Oct;6(10):3908-17. Epub 2007 Sep 14.

PMID:
17854217
7.

Solution structure of the reduced form of human peroxiredoxin-6 elucidated using zero-length chemical cross-linking and homology modelling.

Rivera-Santiago RF, Harper SL, Zhou S, Sriswasdi S, Feinstein SI, Fisher AB, Speicher DW.

Biochem J. 2015 May 15;468(1):87-98. doi: 10.1042/BJ20141463.

8.

An integrated chemical cross-linking and mass spectrometry approach to study protein complex architecture and function.

Luo J, Fishburn J, Hahn S, Ranish J.

Mol Cell Proteomics. 2012 Feb;11(2):M111.008318. doi: 10.1074/mcp.M111.008318. Epub 2011 Nov 7.

9.

Optimizing the enrichment of cross-linked products for mass spectrometric protein analysis.

Fritzsche R, Ihling CH, Götze M, Sinz A.

Rapid Commun Mass Spectrom. 2012 Mar 30;26(6):653-8. doi: 10.1002/rcm.6150.

PMID:
22328219
10.

Modeling Protein Excited-state Structures from "Over-length" Chemical Cross-links.

Ding YH, Gong Z, Dong X, Liu K, Liu Z, Liu C, He SM, Dong MQ, Tang C.

J Biol Chem. 2017 Jan 27;292(4):1187-1196. doi: 10.1074/jbc.M116.761841. Epub 2016 Dec 19.

PMID:
27994050
11.

An isotopically coded CID-cleavable biotinylated cross-linker for structural proteomics.

Petrotchenko EV, Serpa JJ, Borchers CH.

Mol Cell Proteomics. 2011 Feb;10(2):M110.001420. doi: 10.1074/mcp.M110.001420. Epub 2010 Jul 9.

12.

"Zero-length" cross-linking in solid state as an approach for analysis of protein-protein interactions.

El-Shafey A, Tolic N, Young MM, Sale K, Smith RD, Kery V.

Protein Sci. 2006 Mar;15(3):429-40.

13.

DXMSMS Match Program for Automated Analysis of LC-MS/MS Data Obtained Using Isotopically Coded CID-Cleavable Cross-Linking Reagents.

Petrotchenko EV, Makepeace KA, Borchers CH.

Curr Protoc Bioinformatics. 2014 Dec 12;48:8.18.1-19. doi: 10.1002/0471250953.bi0818s48.

PMID:
25501944
14.
15.
16.

Chemical cross-linking with a diazirine photoactivatable cross-linker investigated by MALDI- and ESI-MS/MS.

Gomes AF, Gozzo FC.

J Mass Spectrom. 2010 Aug;45(8):892-9. doi: 10.1002/jms.1776.

PMID:
20635431
17.

Kojak: efficient analysis of chemically cross-linked protein complexes.

Hoopmann MR, Zelter A, Johnson RS, Riffle M, MacCoss MJ, Davis TN, Moritz RL.

J Proteome Res. 2015 May 1;14(5):2190-8. doi: 10.1021/pr501321h. Epub 2015 Apr 15.

18.

Protein cross-linking analysis using mass spectrometry, isotope-coded cross-linkers, and integrated computational data processing.

Seebacher J, Mallick P, Zhang N, Eddes JS, Aebersold R, Gelb MH.

J Proteome Res. 2006 Sep;5(9):2270-82.

PMID:
16944939
19.

Partial acetylation of lysine residues improves intraprotein cross-linking.

Guo X, Bandyopadhyay P, Schilling B, Young MM, Fujii N, Aynechi T, Guy RK, Kuntz ID, Gibson BW.

Anal Chem. 2008 Feb 15;80(4):951-60. doi: 10.1021/ac701636w. Epub 2008 Jan 18.

PMID:
18201069
20.

Proteome-wide profiling of protein assemblies by cross-linking mass spectrometry.

Liu F, Rijkers DT, Post H, Heck AJ.

Nat Methods. 2015 Dec;12(12):1179-84. doi: 10.1038/nmeth.3603. Epub 2015 Sep 28.

PMID:
26414014

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