Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 105

1.

Plant Genome DataBase Japan (PGDBj): a portal website for the integration of plant genome-related databases.

Asamizu E, Ichihara H, Nakaya A, Nakamura Y, Hirakawa H, Ishii T, Tamura T, Fukami-Kobayashi K, Nakajima Y, Tabata S.

Plant Cell Physiol. 2014 Jan;55(1):e8. doi: 10.1093/pcp/pct189.

2.

Plant Genome DataBase Japan (PGDBj).

Nakaya A, Ichihara H, Asamizu E, Shirasawa S, Nakamura Y, Tabata S, Hirakawa H.

Methods Mol Biol. 2017;1533:45-77.

PMID:
27987164
3.

Rice Annotation Project Database (RAP-DB): an integrative and interactive database for rice genomics.

Sakai H, Lee SS, Tanaka T, Numa H, Kim J, Kawahara Y, Wakimoto H, Yang CC, Iwamoto M, Abe T, Yamada Y, Muto A, Inokuchi H, Ikemura T, Matsumoto T, Sasaki T, Itoh T.

Plant Cell Physiol. 2013 Feb;54(2):e6. doi: 10.1093/pcp/pcs183.

4.

GrameneMart: the BioMart data portal for the Gramene project.

Spooner W, Youens-Clark K, Staines D, Ware D.

Database (Oxford). 2012 Feb 28;2012:bar056. doi: 10.1093/database/bar056.

5.

TriMEDB: a database to integrate transcribed markers and facilitate genetic studies of the tribe Triticeae.

Mochida K, Saisho D, Yoshida T, Sakurai T, Shinozaki K.

BMC Plant Biol. 2008 Jun 30;8:72. doi: 10.1186/1471-2229-8-72.

6.

SABRE2: a database connecting plant EST/full-length cDNA clones with Arabidopsis information.

Fukami-Kobayashi K, Nakamura Y, Tamura T, Kobayashi M.

Plant Cell Physiol. 2014 Jan;55(1):e5. doi: 10.1093/pcp/pct177.

PMID:
24323624
7.

Toward allotetraploid cotton genome assembly: integration of a high-density molecular genetic linkage map with DNA sequence information.

Zhao L, Yuanda L, Caiping C, Xiangchao T, Xiangdong C, Wei Z, Hao D, Xiuhua G, Wangzhen G.

BMC Genomics. 2012 Oct 9;13:539. doi: 10.1186/1471-2164-13-539.

8.

Rice TOGO Browser: A platform to retrieve integrated information on rice functional and applied genomics.

Nagamura Y, Antonio BA, Sato Y, Miyao A, Namiki N, Yonemaru J, Minami H, Kamatsuki K, Shimura K, Shimizu Y, Hirochika H.

Plant Cell Physiol. 2011 Feb;52(2):230-7. doi: 10.1093/pcp/pcq197.

9.

CGKB: an annotation knowledge base for cowpea (Vigna unguiculata L.) methylation filtered genomic genespace sequences.

Chen X, Laudeman TW, Rushton PJ, Spraggins TA, Timko MP.

BMC Bioinformatics. 2007 Apr 19;8:129.

10.

Rice DB: an Oryza Information Portal linking annotation, subcellular location, function, expression, regulation, and evolutionary information for rice and Arabidopsis.

Narsai R, Devenish J, Castleden I, Narsai K, Xu L, Shou H, Whelan J.

Plant J. 2013 Dec;76(6):1057-73. doi: 10.1111/tpj.12357.

11.

Integrating genome annotation and QTL position to identify candidate genes for productivity, architecture and water-use efficiency in Populus spp.

Monclus R, Leplé JC, Bastien C, Bert PF, Villar M, Marron N, Brignolas F, Jorge V.

BMC Plant Biol. 2012 Sep 26;12:173. doi: 10.1186/1471-2229-12-173.

12.

Development of a D genome specific marker resource for diploid and hexaploid wheat.

Wang Y, Drader T, Tiwari VK, Dong L, Kumar A, Huo N, Ghavami F, Iqbal MJ, Lazo GR, Leonard J, Gill BS, Kianian SF, Luo MC, Gu YQ.

BMC Genomics. 2015 Aug 28;16:646. doi: 10.1186/s12864-015-1852-2.

13.

NBRP databases: databases of biological resources in Japan.

Yamazaki Y, Akashi R, Banno Y, Endo T, Ezura H, Fukami-Kobayashi K, Inaba K, Isa T, Kamei K, Kasai F, Kobayashi M, Kurata N, Kusaba M, Matuzawa T, Mitani S, Nakamura T, Nakamura Y, Nakatsuji N, Naruse K, Niki H, Nitasaka E, Obata Y, Okamoto H, Okuma M, Sato K, Serikawa T, Shiroishi T, Sugawara H, Urushibara H, Yamamoto M, Yaoita Y, Yoshiki A, Kohara Y.

Nucleic Acids Res. 2010 Jan;38(Database issue):D26-32. doi: 10.1093/nar/gkp996.

14.

The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information.

Ohyanagi H, Tanaka T, Sakai H, Shigemoto Y, Yamaguchi K, Habara T, Fujii Y, Antonio BA, Nagamura Y, Imanishi T, Ikeo K, Itoh T, Gojobori T, Sasaki T.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D741-4.

15.

GrainGenes, the genome database for small-grain crops.

Matthews DE, Carollo VL, Lazo GR, Anderson OD.

Nucleic Acids Res. 2003 Jan 1;31(1):183-6.

16.

GrainGenes.

O'Sullivan H.

Methods Mol Biol. 2007;406:301-14.

PMID:
18287699
17.

TriFLDB: a database of clustered full-length coding sequences from Triticeae with applications to comparative grass genomics.

Mochida K, Yoshida T, Sakurai T, Ogihara Y, Shinozaki K.

Plant Physiol. 2009 Jul;150(3):1135-46. doi: 10.1104/pp.109.138214.

18.

ESTree db: a tool for peach functional genomics.

Lazzari B, Caprera A, Vecchietti A, Stella A, Milanesi L, Pozzi C.

BMC Bioinformatics. 2005 Dec 1;6 Suppl 4:S16.

19.

CottonGen: a genomics, genetics and breeding database for cotton research.

Yu J, Jung S, Cheng CH, Ficklin SP, Lee T, Zheng P, Jones D, Percy RG, Main D.

Nucleic Acids Res. 2014 Jan;42(Database issue):D1229-36. doi: 10.1093/nar/gkt1064.

20.

Gramene database: a hub for comparative plant genomics.

Jaiswal P.

Methods Mol Biol. 2011;678:247-75. doi: 10.1007/978-1-60761-682-5_18.

PMID:
20931385

Supplemental Content

Support Center