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Automated identification and location analysis of marked stem cells colonies in optical microscopy images.

Paduano V, Tagliaferri D, Falco G, Ceccarelli M.

PLoS One. 2013 Dec 9;8(12):e80776. doi: 10.1371/journal.pone.0080776. eCollection 2013.


Retinoic Acid Specifically Enhances Embryonic Stem Cell Metastate Marked by Zscan4.

Tagliaferri D, De Angelis MT, Russo NA, Marotta M, Ceccarelli M, Del Vecchio L, De Felice M, Falco G.

PLoS One. 2016 Feb 3;11(2):e0147683. doi: 10.1371/journal.pone.0147683. eCollection 2016.


Emergence of undifferentiated colonies from mouse embryonic stem cells undergoing differentiation by retinoic acid treatment.

Sharova LV, Sharov AA, Piao Y, Stagg CA, Amano T, Qian Y, Dudekula D, Schlessinger D, Ko MS.

In Vitro Cell Dev Biol Anim. 2016 May;52(5):616-24. doi: 10.1007/s11626-016-0013-5. Epub 2016 Apr 29.


Identification of a novel gene signature of ES cells self-renewal fluctuation through system-wide analysis.

Cerulo L, Tagliaferri D, Marotta P, Zoppoli P, Russo F, Mazio C, DeFelice M, Ceccarelli M, Falco G.

PLoS One. 2014 Jan 2;9(1):e83235. doi: 10.1371/journal.pone.0083235. eCollection 2014.


Locust bean gum as an alternative polymeric coating for embryonic stem cell culture.

Perestrelo AR, Grenha A, Rosa da Costa AM, Belo JA.

Mater Sci Eng C Mater Biol Appl. 2014 Jul 1;40:336-44. doi: 10.1016/j.msec.2014.04.022. Epub 2014 Apr 16.


Image-based quantification and mathematical modeling of spatial heterogeneity in ESC colonies.

Herberg M, Zerjatke T, de Back W, Glauche I, Roeder I.

Cytometry A. 2015 Jun;87(6):481-90. doi: 10.1002/cyto.a.22598. Epub 2015 Jan 20.


WNT/β-catenin signaling affects cell lineage and pluripotency-specific gene expression in bovine blastocysts: prospects for bovine embryonic stem cell derivation.

Madeja ZE, Hryniewicz K, Orsztynowicz M, Pawlak P, Perkowska A.

Stem Cells Dev. 2015 Oct 15;24(20):2437-54. doi: 10.1089/scd.2015.0053. Epub 2015 Aug 18.


Dual functions of T-box 3 (Tbx3) in the control of self-renewal and extraembryonic endoderm differentiation in mouse embryonic stem cells.

Lu R, Yang A, Jin Y.

J Biol Chem. 2011 Mar 11;286(10):8425-36. doi: 10.1074/jbc.M110.202150. Epub 2010 Dec 28.


Human testis-derived embryonic stem cell-like cells are not pluripotent, but possess potential of mesenchymal progenitors.

Chikhovskaya JV, Jonker MJ, Meissner A, Breit TM, Repping S, van Pelt AM.

Hum Reprod. 2012 Jan;27(1):210-21. doi: 10.1093/humrep/der383. Epub 2011 Nov 15.


Ly-1 antibody reactive clone is an important nucleolar protein for control of self-renewal and differentiation in embryonic stem cells.

Li H, Wang B, Yang A, Lu R, Wang W, Zhou Y, Shi G, Kwon SW, Zhao Y, Jin Y.

Stem Cells. 2009 Jun;27(6):1244-54. doi: 10.1002/stem.55.


Differentiation-independent fluctuation of pluripotency-related transcription factors and other epigenetic markers in embryonic stem cell colonies.

Sustáčková G, Legartová S, Kozubek S, Stixová L, Pacherník J, Bártová E.

Stem Cells Dev. 2012 Mar 20;21(5):710-20. doi: 10.1089/scd.2011.0085. Epub 2011 Jul 8.


Gene expression signatures defining fundamental biological processes in pluripotent, early, and late differentiated embryonic stem cells.

Gaspar JA, Doss MX, Winkler J, Wagh V, Hescheler J, Kolde R, Vilo J, Schulz H, Sachinidis A.

Stem Cells Dev. 2012 Sep 1;21(13):2471-84. doi: 10.1089/scd.2011.0637. Epub 2012 Apr 17.


Simplified three-dimensional culture system for long-term expansion of embryonic stem cells.

McKee C, Perez-Cruet M, Chavez F, Chaudhry GR.

World J Stem Cells. 2015 Aug 26;7(7):1064-77. doi: 10.4252/wjsc.v7.i7.1064.


Identification and characterization of side population cells in embryonic stem cell cultures.

Vieyra DS, Rosen A, Goodell MA.

Stem Cells Dev. 2009 Oct;18(8):1155-66. doi: 10.1089/scd.2008.0391.


Novel insights into embryonic stem cell self-renewal revealed through comparative human and mouse systems biology networks.

Dowell KG, Simons AK, Bai H, Kell B, Wang ZZ, Yun K, Hibbs MA.

Stem Cells. 2014 May;32(5):1161-72. doi: 10.1002/stem.1612.


LIF supports primitive endoderm expansion during pre-implantation development.

Morgani SM, Brickman JM.

Development. 2015 Oct 15;142(20):3488-99. doi: 10.1242/dev.125021. Epub 2015 Sep 22.


Regulation of embryonic stem cell self-renewal and pluripotency by Foxd3.

Liu Y, Labosky PA.

Stem Cells. 2008 Oct;26(10):2475-84. doi: 10.1634/stemcells.2008-0269. Epub 2008 Jul 24.


Single-cell gene expression profiles define self-renewing, pluripotent, and lineage primed states of human pluripotent stem cells.

Hough SR, Thornton M, Mason E, Mar JC, Wells CA, Pera MF.

Stem Cell Reports. 2014 May 22;2(6):881-95. doi: 10.1016/j.stemcr.2014.04.014. eCollection 2014 Jun 3.


Embryonic stem cell-specific miR302-367 cluster: human gene structure and functional characterization of its core promoter.

Barroso-delJesus A, Romero-López C, Lucena-Aguilar G, Melen GJ, Sanchez L, Ligero G, Berzal-Herranz A, Menendez P.

Mol Cell Biol. 2008 Nov;28(21):6609-19. doi: 10.1128/MCB.00398-08. Epub 2008 Aug 25.


Nucleolin maintains embryonic stem cell self-renewal by suppression of p53 protein-dependent pathway.

Yang A, Shi G, Zhou C, Lu R, Li H, Sun L, Jin Y.

J Biol Chem. 2011 Dec 16;286(50):43370-82. doi: 10.1074/jbc.M111.225185. Epub 2011 Oct 19.

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