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Discovery of protein interactions using parallel analysis of translated ORFs (PLATO).

Larman HB, Liang AC, Elledge SJ, Zhu J.

Nat Protoc. 2014 Jan;9(1):90-103. doi: 10.1038/nprot.2013.167. Epub 2013 Dec 12.


Protein interaction discovery using parallel analysis of translated ORFs (PLATO).

Zhu J, Larman HB, Gao G, Somwar R, Zhang Z, Laserson U, Ciccia A, Pavlova N, Church G, Zhang W, Kesari S, Elledge SJ.

Nat Biotechnol. 2013 Apr;31(4):331-334. doi: 10.1038/nbt.2539. Epub 2013 Mar 17.


Ribosome display: selecting and evolving proteins in vitro that specifically bind to a target.

Zahnd C, Amstutz P, Plückthun A.

Nat Methods. 2007 Mar;4(3):269-79.


Complete genome sequence of Methanobacterium thermoautotrophicum deltaH: functional analysis and comparative genomics.

Smith DR, Doucette-Stamm LA, Deloughery C, Lee H, Dubois J, Aldredge T, Bashirzadeh R, Blakely D, Cook R, Gilbert K, Harrison D, Hoang L, Keagle P, Lumm W, Pothier B, Qiu D, Spadafora R, Vicaire R, Wang Y, Wierzbowski J, Gibson R, Jiwani N, Caruso A, Bush D, Reeve JN, et al.

J Bacteriol. 1997 Nov;179(22):7135-55.


Construction of a highly flexible and comprehensive gene collection representing the ORFeome of the human pathogen Chlamydia pneumoniae.

Maier CJ, Maier RH, Virok DP, Maass M, Hintner H, Bauer JW, Onder K.

BMC Genomics. 2012 Nov 16;13:632. doi: 10.1186/1471-2164-13-632.


The Xenopus ORFeome: A resource that enables functional genomics.

Grant IM, Balcha D, Hao T, Shen Y, Trivedi P, Patrushev I, Fortriede JD, Karpinka JB, Liu L, Zorn AM, Stukenberg PT, Hill DE, Gilchrist MJ.

Dev Biol. 2015 Dec 15;408(2):345-57. doi: 10.1016/j.ydbio.2015.09.004. Epub 2015 Sep 29.


Selecting open reading frames from DNA.

Zacchi P, Sblattero D, Florian F, Marzari R, Bradbury AR.

Genome Res. 2003 May;13(5):980-90.


Phage display of cDNA libraries: enrichment of cDNA expression using open reading frame selection.

Faix PH, Burg MA, Gonzales M, Ravey EP, Baird A, Larocca D.

Biotechniques. 2004 Jun;36(6):1018-22, 1024, 1026-9.


Yeast two-hybrid system for studying protein-protein interactions--stage 2: Transforming and characterizing the library.

Serebriiskii I.

Cold Spring Harb Protoc. 2010 May;2010(5):pdb.prot5430. doi: 10.1101/pdb.prot5430.


Biotin-tagged cDNA expression libraries displayed on lambda phage: a new tool for the selection of natural protein ligands.

Ansuini H, Cicchini C, Nicosia A, Tripodi M, Cortese R, Luzzago A.

Nucleic Acids Res. 2002 Aug 1;30(15):e78.


Identification of protein-protein interactions by standard gal4p-based yeast two-hybrid screening.

Wagemans J, Lavigne R.

Methods Mol Biol. 2015;1278:409-31. doi: 10.1007/978-1-4939-2425-7_27.


Rapid interactome profiling by massive sequencing.

Di Niro R, Sulic AM, Mignone F, D'Angelo S, Bordoni R, Iacono M, Marzari R, Gaiotto T, Lavric M, Bradbury AR, Biancone L, Zevin-Sonkin D, De Bellis G, Santoro C, Sblattero D.

Nucleic Acids Res. 2010 May;38(9):e110. doi: 10.1093/nar/gkq052. Epub 2010 Feb 9.


Construction of a reading frame-independent yeast two-hybrid vector system for site-specific recombinational cloning and protein interaction screening.

Maier R, Brandner C, Hintner H, Bauer J, Onder K.

Biotechniques. 2008 Sep;45(3):235-44. doi: 10.2144/000112897.


Imaging beads-retained prey assay for rapid and quantitative protein-protein interaction.

Zhou Y, Hong W, Lu L.

PLoS One. 2013;8(3):e59727. doi: 10.1371/journal.pone.0059727. Epub 2013 Mar 29.


Filtering "genic" open reading frames from genomic DNA samples for advanced annotation.

D'Angelo S, Velappan N, Mignone F, Santoro C, Sblattero D, Kiss C, Bradbury AR.

BMC Genomics. 2011 Jun 15;12 Suppl 1:S5. doi: 10.1186/1471-2164-12-S1-S5.


The ORFeome of Staphylococcus aureus v 1.1.

Brandner CJ, Maier RH, Henderson DS, Hintner H, Bauer JW, Onder K.

BMC Genomics. 2008 Jul 7;9:321. doi: 10.1186/1471-2164-9-321.


Using the yeast two-hybrid system to identify protein-protein interactions.

Rodríguez-Negrete E, Bejarano ER, Castillo AG.

Methods Mol Biol. 2014;1072:241-58. doi: 10.1007/978-1-62703-631-3_18.


Efficient identification of tubby-binding proteins by an improved system of T7 phage display.

Caberoy NB, Zhou Y, Jiang X, Alvarado G, Li W.

J Mol Recognit. 2010 Jan-Feb;23(1):74-83. doi: 10.1002/jmr.983.


Cloning and analysis of the mating type genes from Cochliobolus heterostrophus.

Turgeon BG, Bohlmann H, Ciuffetti LM, Christiansen SK, Yang G, Schäfer W, Yoder OC.

Mol Gen Genet. 1993 Apr;238(1-2):270-84.


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