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CD4(+) T Cell-Receptor Repertoire Diversity is Compromised in the Spleen but Not in the Bone Marrow of Aged Mice Due to Private and Sporadic Clonal Expansions.

Shifrut E, Baruch K, Gal H, Ndifon W, Deczkowska A, Schwartz M, Friedman N.

Front Immunol. 2013 Nov 19;4:379. doi: 10.3389/fimmu.2013.00379. eCollection 2013.


High-throughput sequencing reveals restricted TCR Vβ usage and public TCRβ clonotypes among pancreatic lymph node memory CD4(+) T cells and their involvement in autoimmune diabetes.

Marrero I, Aguilera C, Hamm DE, Quinn A, Kumar V.

Mol Immunol. 2016 Jun;74:82-95. doi: 10.1016/j.molimm.2016.04.013. Epub 2016 May 6.


Islet-associated T-cell receptor-β CDR sequence repertoire in prediabetic NOD mice reveals antigen-driven T-cell expansion and shared usage of VβJβ TCR chains.

Toivonen R, Arstila TP, Hänninen A.

Mol Immunol. 2015 Mar;64(1):127-35. doi: 10.1016/j.molimm.2014.11.009. Epub 2014 Dec 3.


Autoreactive effector/memory CD4+ and CD8+ T cells infiltrating grafted and endogenous islets in diabetic NOD mice exhibit similar T cell receptor usage.

Diz R, Garland A, Vincent BG, Johnson MC, Spidale N, Wang B, Tisch R.

PLoS One. 2012;7(12):e52054. doi: 10.1371/journal.pone.0052054. Epub 2012 Dec 14.


Human TCR alpha/beta+ CD4-CD8- double-negative T cells in patients with autoimmune lymphoproliferative syndrome express restricted Vbeta TCR diversity and are clonally related to CD8+ T cells.

Bristeau-Leprince A, Mateo V, Lim A, Magerus-Chatinet A, Solary E, Fischer A, Rieux-Laucat F, Gougeon ML.

J Immunol. 2008 Jul 1;181(1):440-8.


High-throughput sequencing of islet-infiltrating memory CD4+ T cells reveals a similar pattern of TCR Vβ usage in prediabetic and diabetic NOD mice.

Marrero I, Hamm DE, Davies JD.

PLoS One. 2013 Oct 17;8(10):e76546. doi: 10.1371/journal.pone.0076546. eCollection 2013.


Tracking global changes induced in the CD4 T-cell receptor repertoire by immunization with a complex antigen using short stretches of CDR3 protein sequence.

Thomas N, Best K, Cinelli M, Reich-Zeliger S, Gal H, Shifrut E, Madi A, Friedman N, Shawe-Taylor J, Chain B.

Bioinformatics. 2014 Nov 15;30(22):3181-8. doi: 10.1093/bioinformatics/btu523. Epub 2014 Aug 5.


Receptor revision in peripheral T cells creates a diverse V beta repertoire.

McMahan CJ, Fink PJ.

J Immunol. 2000 Dec 15;165(12):6902-7.


T cell receptor CDR3 loop length repertoire is determined primarily by features of the V(D)J recombination reaction.

Hughes MM, Yassai M, Sedy JR, Wehrly TD, Huang CY, Kanagawa O, Gorski J, Sleckman BP.

Eur J Immunol. 2003 Jun;33(6):1568-75.


A novel approach to tracking antigen-experienced CD4 T cells into functional compartments via tandem deep and shallow TCR clonotyping.

Estorninho M, Gibson VB, Kronenberg-Versteeg D, Liu YF, Ni C, Cerosaletti K, Peakman M.

J Immunol. 2013 Dec 1;191(11):5430-40. doi: 10.4049/jimmunol.1300622. Epub 2013 Oct 25.


Longitudinal analysis of peripheral blood T cell receptor diversity in patients with systemic lupus erythematosus by next-generation sequencing.

Thapa DR, Tonikian R, Sun C, Liu M, Dearth A, Petri M, Pepin F, Emerson RO, Ranger A.

Arthritis Res Ther. 2015 May 23;17:132. doi: 10.1186/s13075-015-0655-9.


Aging-related changes in human T-cell repertoire over 20years delineated by deep sequencing of peripheral T-cell receptors.

Yoshida K, Cologne JB, Cordova K, Misumi M, Yamaoka M, Kyoizumi S, Hayashi T, Robins H, Kusunoki Y.

Exp Gerontol. 2017 Oct 1;96:29-37. doi: 10.1016/j.exger.2017.05.015. Epub 2017 May 20.


Clonal expansions and loss of receptor diversity in the naive CD8 T cell repertoire of aged mice.

Ahmed M, Lanzer KG, Yager EJ, Adams PS, Johnson LL, Blackman MA.

J Immunol. 2009 Jan 15;182(2):784-92.


The repertoire of CD4+ CD28- T cells in rheumatoid arthritis.

Schmidt D, Martens PB, Weyand CM, Goronzy JJ.

Mol Med. 1996 Sep;2(5):608-18.


CD8+ T-cell clones dominate brain infiltrates in Rasmussen encephalitis and persist in the periphery.

Schwab N, Bien CG, Waschbisch A, Becker A, Vince GH, Dornmair K, Wiendl H.

Brain. 2009 May;132(Pt 5):1236-46. doi: 10.1093/brain/awp003. Epub 2009 Jan 29.


Conventional and Regulatory CD4+ T Cells That Share Identical TCRs Are Derived from Common Clones.

Wolf KJ, Emerson RO, Pingel J, Buller RM, DiPaolo RJ.

PLoS One. 2016 Apr 21;11(4):e0153705. doi: 10.1371/journal.pone.0153705. eCollection 2016.


Application of the molecular analysis of the T-cell receptor repertoire in the study of immune-mediated hematologic diseases.

Plasilova M, Risitano A, Maciejewski JP.

Hematology. 2003 Jun;8(3):173-81. Review.


Characterization of bone marrow T cells in monoclonal gammopathy of undetermined significance, multiple myeloma, and plasma cell leukemia demonstrates increased infiltration by cytotoxic/Th1 T cells demonstrating a squed TCR-Vbeta repertoire.

Pérez-Andres M, Almeida J, Martin-Ayuso M, Moro MJ, Martin-Nuñez G, Galende J, Hernandez J, Mateo G, San Miguel JF, Orfao A; Spanish Network on Multiple Myeloma; Spanish Network of Cancer Research Centers.

Cancer. 2006 Mar 15;106(6):1296-305.


Conserved T cell receptor usage in primary and recall responses to an immunodominant influenza virus nucleoprotein epitope.

Kedzierska K, Turner SJ, Doherty PC.

Proc Natl Acad Sci U S A. 2004 Apr 6;101(14):4942-7. Epub 2004 Mar 22.

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