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Ribosome profiling reveals pervasive and regulated stop codon readthrough in Drosophila melanogaster.

Dunn JG, Foo CK, Belletier NG, Gavis ER, Weissman JS.

Elife. 2013 Dec 3;2:e01179. doi: 10.7554/eLife.01179.


Evolutionary Dynamics of Abundant Stop Codon Readthrough.

Jungreis I, Chan CS, Waterhouse RM, Fields G, Lin MF, Kellis M.

Mol Biol Evol. 2016 Dec;33(12):3108-3132. Epub 2016 Sep 7.


Computational analysis of stop codon readthrough in D.melanogaster.

Sato M, Umeki H, Saito R, Kanai A, Tomita M.

Bioinformatics. 2003 Jul 22;19(11):1371-80.


Genome-wide prediction of stop codon readthrough during translation in the yeast Saccharomyces cerevisiae.

Williams I, Richardson J, Starkey A, Stansfield I.

Nucleic Acids Res. 2004 Dec 15;32(22):6605-16. Print 2004.


Evidence of abundant stop codon readthrough in Drosophila and other metazoa.

Jungreis I, Lin MF, Spokony R, Chan CS, Negre N, Victorsen A, White KP, Kellis M.

Genome Res. 2011 Dec;21(12):2096-113. doi: 10.1101/gr.119974.110. Epub 2011 Oct 12.


RiboTools: a Galaxy toolbox for qualitative ribosome profiling analysis.

Legendre R, Baudin-Baillieu A, Hatin I, Namy O.

Bioinformatics. 2015 Aug 1;31(15):2586-8. doi: 10.1093/bioinformatics/btv174. Epub 2015 Mar 25.


Regulated translational bypass of stop codons in yeast.

von der Haar T, Tuite MF.

Trends Microbiol. 2007 Feb;15(2):78-86. Epub 2006 Dec 21. Review.


Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling.

Ingolia NT, Ghaemmaghami S, Newman JR, Weissman JS.

Science. 2009 Apr 10;324(5924):218-23. doi: 10.1126/science.1168978. Epub 2009 Feb 12.


New insights into the incorporation of natural suppressor tRNAs at stop codons in Saccharomyces cerevisiae.

Blanchet S, Cornu D, Argentini M, Namy O.

Nucleic Acids Res. 2014 Sep;42(15):10061-72. doi: 10.1093/nar/gku663. Epub 2014 Jul 23.


Versatile dual reporter gene systems for investigating stop codon readthrough in plants.

Lao NT, Maloney AP, Atkins JF, Kavanagh TA.

PLoS One. 2009 Oct 9;4(10):e7354. doi: 10.1371/journal.pone.0007354.


Functional Translational Readthrough: A Systems Biology Perspective.

Schueren F, Thoms S.

PLoS Genet. 2016 Aug 4;12(8):e1006196. doi: 10.1371/journal.pgen.1006196. eCollection 2016 Aug. Review. Erratum in: PLoS Genet. 2016 Nov 4;12 (11):e1006434.


Translation initiation factor eIF3 promotes programmed stop codon readthrough.

Beznosková P, Wagner S, Jansen ME, von der Haar T, Valášek LS.

Nucleic Acids Res. 2015 May 26;43(10):5099-111. doi: 10.1093/nar/gkv421. Epub 2015 Apr 29.


Ribosomal readthrough at a short UGA stop codon context triggers dual localization of metabolic enzymes in Fungi and animals.

Stiebler AC, Freitag J, Schink KO, Stehlik T, Tillmann BA, Ast J, Bölker M.

PLoS Genet. 2014 Oct 23;10(10):e1004685. doi: 10.1371/journal.pgen.1004685. eCollection 2014 Oct.


Heterologous stop codon readthrough of metazoan readthrough candidates in yeast.

Chan CS, Jungreis I, Kellis M.

PLoS One. 2013;8(3):e59450. doi: 10.1371/journal.pone.0059450. Epub 2013 Mar 27.


Distinct stages of the translation elongation cycle revealed by sequencing ribosome-protected mRNA fragments.

Lareau LF, Hite DH, Hogan GJ, Brown PO.

Elife. 2014 May 9;3:e01257. doi: 10.7554/eLife.01257.


Polypeptide chain termination and stop codon readthrough on eukaryotic ribosomes.

Rospert S, Rakwalska M, Dubaquié Y.

Rev Physiol Biochem Pharmacol. 2005;155:1-30. Review.


The effect of eukaryotic release factor depletion on translation termination in human cell lines.

Janzen DM, Geballe AP.

Nucleic Acids Res. 2004 Aug 23;32(15):4491-502. Print 2004.


Evidence of efficient stop codon readthrough in four mammalian genes.

Loughran G, Chou MY, Ivanov IP, Jungreis I, Kellis M, Kiran AM, Baranov PV, Atkins JF.

Nucleic Acids Res. 2014 Aug;42(14):8928-38. doi: 10.1093/nar/gku608. Epub 2014 Jul 10.


Rli1/ABCE1 Recycles Terminating Ribosomes and Controls Translation Reinitiation in 3'UTRs In Vivo.

Young DJ, Guydosh NR, Zhang F, Hinnebusch AG, Green R.

Cell. 2015 Aug 13;162(4):872-84. doi: 10.1016/j.cell.2015.07.041.

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