Similar articles for PMID: 24295137

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1

Ontology of physics for biology: representing physical dependencies as a basis for biological processes.

Cook DL, Neal ML, Bookstein FL, Gennari JH. Cook DL, et al. J Biomed Semantics. 2013 Dec 2;4(1):41. doi: 10.1186/2041-1480-4-41. J Biomed Semantics. 2013. PMID: 24295137 Free PMC article.

2

Physical properties of biological entities: an introduction to the ontology of physics for biology.

Cook DL, Bookstein FL, Gennari JH. Cook DL, et al. PLoS One. 2011;6(12):e28708. doi: 10.1371/journal.pone.0028708. Epub 2011 Dec 27. PLoS One. 2011. PMID: 22216106 Free PMC article.

3

Bridging biological ontologies and biosimulation: the ontology of physics for biology.

Cook DL, Mejino JL, Neal ML, Gennari JH. Cook DL, et al. AMIA Annu Symp Proc. 2008 Nov 6;2008:136-40. AMIA Annu Symp Proc. 2008. PMID: 18999003 Free PMC article.

4

Representing physiological processes and their participants with PhysioMaps.

Cook DL, Neal ML, Hoehndorf R, Gkoutos GV, Gennari JH. Cook DL, et al. J Biomed Semantics. 2013 Apr 15;4 Suppl 1(Suppl 1):S2. doi: 10.1186/2041-1480-4-S1-S2. Epub 2013 Apr 15. J Biomed Semantics. 2013. PMID: 23735231 Free PMC article.

5

Macromolecular crowding: chemistry and physics meet biology (Ascona, Switzerland, 10-14 June 2012).

Foffi G, Pastore A, Piazza F, Temussi PA. Foffi G, et al. Phys Biol. 2013 Aug;10(4):040301. doi: 10.1088/1478-3975/10/4/040301. Epub 2013 Aug 2. Phys Biol. 2013. PMID: 23912807

6

Qualitative causal analyses of biosimulation models.

Neal ML, Gennari JH, Cook DL. Neal ML, et al. CEUR Workshop Proc. 2016 Aug;1747:http://ceur-ws.org/Vol-1747/IT604_ICBO2016.pdf. Epub 2016 Nov 29. CEUR Workshop Proc. 2016. PMID: 28804276 Free PMC article.

7

OpenCMISS: a multi-physics & multi-scale computational infrastructure for the VPH/Physiome project.

Bradley C, Bowery A, Britten R, Budelmann V, Camara O, Christie R, Cookson A, Frangi AF, Gamage TB, Heidlauf T, Krittian S, Ladd D, Little C, Mithraratne K, Nash M, Nickerson D, Nielsen P, Nordbø O, Omholt S, Pashaei A, Paterson D, Rajagopal V, Reeve A, Röhrle O, Safaei S, Sebastián R, Steghöfer M, Wu T, Yu T, Zhang H, Hunter P. Bradley C, et al. Prog Biophys Mol Biol. 2011 Oct;107(1):32-47. doi: 10.1016/j.pbiomolbio.2011.06.015. Epub 2011 Jul 7. Prog Biophys Mol Biol. 2011. PMID: 21762717

8

Integration of multi-scale biosimulation models via light-weight semantics.

Gennari JH, Neal ML, Carlson BE, Cook DL. Gennari JH, et al. Pac Symp Biocomput. 2008:414-25. Pac Symp Biocomput. 2008. PMID: 18229704 Free PMC article.

9

Toward a VPH/Physiome ToolKit.

Garny A, Cooper J, Hunter PJ. Garny A, et al. Wiley Interdiscip Rev Syst Biol Med. 2010 Mar-Apr;2(2):134-147. doi: 10.1002/wsbm.63. Wiley Interdiscip Rev Syst Biol Med. 2010. PMID: 20836018 Review.

10

The bacterial interlocked process ONtology (BiPON): a systemic multi-scale unified representation of biological processes in prokaryotes.

Henry VJ, Goelzer A, Ferré A, Fischer S, Dinh M, Loux V, Froidevaux C, Fromion V. Henry VJ, et al. J Biomed Semantics. 2017 Nov 23;8(1):53. doi: 10.1186/s13326-017-0165-6. J Biomed Semantics. 2017. PMID: 29169408 Free PMC article.

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